Pairwise Alignments

Query, 203 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase from Variovorax sp. SCN45

Subject, 181 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Vibrio cholerae E7946 ATCC 55056

 Score =  169 bits (429), Expect = 2e-47
 Identities = 82/174 (47%), Positives = 111/174 (63%), Gaps = 3/174 (1%)

Query: 19  GWYRFAKALPSPNFGPRPAGAQTDLVVIHSISLPPGEYGGDAVQRLFTNRLDWDAHPYFQ 78
           GWYR A+ +PSP+   R       L+V+H+ISLPPG++GG  +++ F   LD + H +F+
Sbjct: 6   GWYRLARKVPSPHCDVRHDSEDISLLVVHNISLPPGQFGGPYIEQFFLGELDANQHSFFK 65

Query: 79  SIRGLEVSSHFYVRRNGELWQFVSCDDRAWHAGVSSWRGRGNCNDDSVGIELEGLEGQPF 138
            I  + VS+H  +RR+GE+ QFV    RAWHAGVSS+ GR  CND S+GIELEG +  P+
Sbjct: 66  VIAKMRVSAHCVIRRDGEVVQFVPFHLRAWHAGVSSFAGRAKCNDYSIGIELEGSDFVPY 125

Query: 139 DEPQYETLASLCAAIAQHYP---IAHIAGHEHIAPGRKQDPGAGFDWRLLREQL 189
            + QY+ L  L  A+   YP   +  I GH++IAP RK DPG  FDWR  R  L
Sbjct: 126 TDAQYQALTELTQALMVRYPHITLPRITGHQYIAPLRKTDPGLVFDWRRFRAGL 179