Pairwise Alignments

Query, 317 a.a., Mobile element protein from Variovorax sp. SCN45

Subject, 318 a.a., ISSod11, transposase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  150 bits (378), Expect = 5e-41
 Identities = 105/311 (33%), Positives = 160/311 (51%), Gaps = 16/311 (5%)

Query: 11  GVSLP----EFFARYGTEEQCTAALAALRWPEGFRCPRCAS-AAHYVVGHGARKLFQCQA 65
           GV  P    EF   +  E+ CT+ L ALRWP GF CP C+S  + Y + +G  K   C A
Sbjct: 11  GVDYPTNWDEFVDWFHDEQSCTSYLYALRWPNGFICPSCSSHQSPYQLSNGKLK---CHA 67

Query: 66  CRHQTSLTASTLMDSTKLPLRTWFLAIFLISQNKTGLSSLALMRQLGT-SYRTAWLIHHK 124
           CR Q S+T+STL D T+ P+++WF A++ I+  K G+S+L + R LG  SY+TAW + HK
Sbjct: 68  CRFQCSVTSSTLFDKTRTPMKSWFAAVWFITNQKNGVSALGVQRLLGLGSYQTAWSLMHK 127

Query: 125 LMTAMAEHDRRQPLSGDVQLDDAYLGGERP--GVGGRGSPNKVPIVAAVSTNDAGHPLRV 182
           L  AM + + R  LSG V++D+  +GG  P   +  +    K  ++ AV         R+
Sbjct: 128 LRYAMVDPE-RDKLSGIVEVDETLIGGVIPKSSIKNQQGKRKAIVLVAVELLSPSGFGRI 186

Query: 183 KVSPVAAFTTEAIKRWAQVNLLPGCDVRSDGLNCFAGVIDAGCAHSYIV-VGSRKPRDMP 241
           ++  V + T E I ++ Q  + PG  + SDG   +  +   G  H+ +V +GS  P    
Sbjct: 187 RLRQVESATKEHIHQFIQDVIEPGSTICSDGSQAYKQIDKKGYKHNRMVHLGSSVPAH-E 245

Query: 242 QFSWVNTVLGNLKTMIGGAHKAFKFRKYATQYLGAFAYRFNARFNLNNLLL--GLLGHAA 299
             + V+ V    K  + G ++     K    YL  F +RFN R + +  LL   LL  A 
Sbjct: 246 TMAGVHRVSSLCKRWLLGTYQGAVKAKQLDYYLDEFTFRFNRRKSDSRGLLFYRLLEQAV 305

Query: 300 TASPTRERQIR 310
            + P   + I+
Sbjct: 306 RSKPITYQSIK 316