Pairwise Alignments

Query, 295 a.a., Membrane-fusion protein from Variovorax sp. SCN45

Subject, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score = 94.4 bits (233), Expect = 3e-24
 Identities = 80/301 (26%), Positives = 140/301 (46%), Gaps = 26/301 (8%)

Query: 1   VASRVTGFIRQLDVREGQAVRRGDLLLRIDASDIDAAIAQARAGVQAAQEAWRDAQHDVN 60
           +A+ V G +  + V+  Q V++G +L+++D     AA+ +A+A +Q       D Q  + 
Sbjct: 62  IAAEVAGKVDMIAVQANQQVKKGQILIKLDDDKAQAALVEAKAYLQ-------DEQRKLT 114

Query: 61  QNAQLVPAGAISADALRKSRVREETTRAALEQAQSALAAAQAQRNYVTITSPVDGVVVSV 120
           +  +L+   AI+   +       +  RA +E  Q+ L AAQA    + IT+P DG V  +
Sbjct: 115 EYERLLKRNAITPTEI-------DAQRARVEIGQARLNAAQANLADLHITAPFDGTVGFI 167

Query: 121 ARRSGEMAAPGAPLMTVESREVLLFKAFVPERSLAAVKAGDSIPVRIDALGDERLKGRVR 180
               G+  + G+ L+T+++  ++     +PER L  +  G  +    +A  + + +G V 
Sbjct: 168 DFSRGKWVSAGSELLTLDNLSLMRLDLQIPERYLPQLSKGMKVQGSSEAWPNVQFEGSVV 227

Query: 181 GVVPSGDGVTRRYEVDIVLPR-DARLLPGMFGRLEILLDEKRAVTVPRAALVRRGGLDGV 239
            V    +  T    V +  P  D RL PGM     I      A  +P  AL   G    V
Sbjct: 228 AVDSRINQETLNLRVRVHFPNPDQRLKPGMLMSARIHFPAISAPIIPVQALEYSGTKRFV 287

Query: 240 FVL-QDGVARFRWLRTGQRLGDVVEVSAGLSDGETIL----------ASVADTVHDGMPV 288
           +V+ +D VA+ R +  G R+ + V +  GL  GE I+          A V++   +G P+
Sbjct: 288 YVIGEDNVAKRREVSLGARVENQVVIEKGLQIGEKIVVQGIVNMRDNARVSEVTVEGRPL 347

Query: 289 Q 289
           +
Sbjct: 348 K 348