Pairwise Alignments

Query, 664 a.a., Type IV secretory pathway, VirD2 components (relaxase) from Variovorax sp. SCN45

Subject, 603 a.a., hypothetical protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  400 bits (1028), Expect = e-116
 Identities = 264/669 (39%), Positives = 350/669 (52%), Gaps = 107/669 (15%)

Query: 6   DDDFRVRPSAPKNRGKGQGQSFVSKVLKQTGKASSGKSTVRRPGSAGGTGQRPG-SRLGR 64
           D+DF VRP   ++    Q +S +++VL+   KA         PG  GG    PG  R G 
Sbjct: 23  DNDFHVRPGRIRSGRSPQAKSVLNQVLRAARKAGPS------PGKIGGPKHGPGYGRSGF 76

Query: 65  GHTAARFAGAKLTPMSRRVTIKTLLVNHQRASPQS--LAKHLRYIERDGVGRDGEPGQAY 122
           G     F+  +L   +RRV +K  +V HQ  S +S  L  HL Y++R+GV RDGE G  +
Sbjct: 77  GRGRLSFSRTRLFSPARRVVVKARVVRHQGKSFRSAPLTAHLSYLKREGVSRDGEKGILF 136

Query: 123 GPQTDMADLDAFKERCADDRHHFRFILSPEDGAELEDLRTYTRHLMGRMEADLGTGLDWV 182
              +D AD  AF ERC DDRHHFRFI+SPED  E+ DL+ +TR L  +MEADLGT LDWV
Sbjct: 137 DAGSDRADEAAFAERCRDDRHHFRFIVSPEDAGEMTDLKAFTRDLARQMEADLGTKLDWV 196

Query: 183 AVNHWNTDNPHTHIVVRGRDDTGKDLIIAGDYIADGFRHRAAELATEWLGPRTELEIRQT 242
           AV+HWNTDNPH H++VRG DDTG DL+I+ DYI+ G R RA +L +  LGPR E  +R  
Sbjct: 197 AVDHWNTDNPHVHLLVRGVDDTGADLVISRDYISHGLRSRAEDLVSIELGPRPEHVLRHA 256

Query: 243 LQREVEQERWTSLDRTLKREMSETGGDGLL-HVERLNEPRLQRQRLLLIGRLQRLQRLGL 301
           L++E+  ERWT LD  ++    E G   L       N+P ++R   L+IGRLQ L+ +GL
Sbjct: 257 LEKEITAERWTRLDVEIRFAADELGYIDLRPDTPGANDPEIRR---LMIGRLQHLETMGL 313

Query: 302 VEEAKPGIWAVHADAEKTLCTLGERGDIIRTMRRAMRGKPRELAVFEPGDDGRTILGRVA 361
             + +PG W+V  +AE+ L  LG RGDII+TM RA           E G+D         
Sbjct: 314 ASQGRPGEWSVALEAERQLRDLGLRGDIIKTMHRAFT---------ERGED--------- 355

Query: 362 AKGLADELRDRGYLVIDGADGKAHYVALNARDELANYPTGAVVEVKGSADVRAADKNIAE 421
            +G+AD + D     I G       V     DEL    TG    V    D RA       
Sbjct: 356 -RGIADYVIDDCSTPIIG-----RLVDRGLHDEL----TGEAYAVIDGVDGRA------- 398

Query: 422 LASDGLYRTDHHLAIERGRAKPGRDPQEVVAAHVRRLEALRRAGIVERVAEGLWKVPDDL 481
                     HH+      A     P                 GIVE             
Sbjct: 399 ----------HHVRFHGIEAFEQSPPL---------------GGIVE------------- 420

Query: 482 AERGRQYDAQRLGG-------VAVELKSHLPIERQARVIGATWLDQQLIGGGS---GLGD 531
                    +R GG       + +  +S + ++ Q    GATWLD +LI        LG 
Sbjct: 421 --------VRRFGGTDDPRPTLVLAPRSDVDLKAQVTAPGATWLDHRLIEREPMPLSLG- 471

Query: 532 LGFGAEAKQAMQQRADFLAEQGLAERRGQRVILARNLLGTLRNRELVQAAKDIAAETGLG 591
            G GA+ + AM  R + L EQGLA R+ QRVI  R+LL TL+ REL     + A +TGL 
Sbjct: 472 -GVGADVRAAMAARTEHLIEQGLARRQNQRVIFQRDLLATLQRRELDAVGAEHAGKTGLS 530

Query: 592 HRPVADGQRVAGIYRRSVMLTSGRYAMLDDGMGFALVPWKPVIEQRLGQQLAATVR-GGG 650
           ++    G+ VAG+YR+ +ML+SGR+AM+D+G+GF LVPW   IE++LGQQL    + GGG
Sbjct: 531 YQTAEAGEHVAGLYRQRLMLSSGRFAMIDNGLGFQLVPWSREIEKKLGQQLTGIAKSGGG 590

Query: 651 ASWEMGRTR 659
             W +GR R
Sbjct: 591 IEWGIGRKR 599