Pairwise Alignments

Query, 599 a.a., ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) from Variovorax sp. SCN45

Subject, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

 Score =  101 bits (251), Expect = 1e-25
 Identities = 91/294 (30%), Positives = 150/294 (51%), Gaps = 25/294 (8%)

Query: 7   DDLNPEQEAAILEP-GSVFLIACPGSGKTRTLTYKIAYELSRLKSNKQFVVAITYTHRAA 65
           D LN +Q  A+  P  ++ ++A  GSGKTR L ++IA+ +S  +++   V+A+T+T++AA
Sbjct: 9   DGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAA 68

Query: 66  DEIHERIEGLGVDT-SRLWIGTIHSFCLEWILKPYGIYHEALERGYRVIDQHEREKILET 124
            E+  RIE L   T S +W GT H  C   IL+ + +  + LE  +++ID  +++++L+ 
Sbjct: 69  AEMRGRIEELMHGTASGMWCGTFHGIC-HRILRAHYLDAKLLE-DFQIIDSDDQQRLLKR 126

Query: 125 LCKPY-----QKP--KITFW---DCEFYFTETGYVLSCPQAWKHTGLHAILGQYFEKLQE 174
           L K +     Q P  ++ +W     +     T      P    +  L+     Y E    
Sbjct: 127 LIKAHNLDDKQWPARQVAWWINNQKDEGLRPTHINAFDPVTQTYLKLYT---AYQEACDR 183

Query: 175 SRQIDFELILYYAYQLIVSRPAISVLLGQLFSFVLIDEYQDTKRIQYSIVTAILKAGQGA 234
           +  +DF  IL  A +L+     I       F  +L+DE+QDT  IQY    A L+   GA
Sbjct: 184 AGLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQY----AWLRMMAGA 239

Query: 235 -TKAFIVGDPNQAIYQSLGGYPIAFEDF-RAMAGIDLKKLELSKNYRSSERIID 286
            +   IVGD +Q+IY   G      E F R    ++  +LE  +NYRS++ I++
Sbjct: 240 QSNVMIVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLE--QNYRSTKTILE 291



 Score = 32.3 bits (72), Expect = 7e-05
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 512 ITISTIHGVKGAEFDVVIAYALLEDMVP---HFNDPNGQESAMKLLYVIGSRARKNLHLI 568
           + + T+H  KG EF +V    + E M P      +    E   +L YV  +RA + L++ 
Sbjct: 554 VQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCYVGMTRAMQKLYIT 613

Query: 569 SERGRIRQYSGDEY 582
               R R Y  D+Y
Sbjct: 614 YAEMR-RLYGQDKY 626