Pairwise Alignments

Query, 599 a.a., ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) from Variovorax sp. SCN45

Subject, 768 a.a., UvrD/REP helicase (NCBI) from Rhodospirillum rubrum S1H

 Score = 94.4 bits (233), Expect = 2e-23
 Identities = 86/302 (28%), Positives = 144/302 (47%), Gaps = 43/302 (14%)

Query: 9   LNPEQEAAILEP-GSVFLIACPGSGKTRTLTYKIAYELSRLKSNKQFVVAITYTHRAADE 67
           LNPEQ AA+    G V +++  G+GKTR LT ++A  L+        V+A+T+T+RAA E
Sbjct: 28  LNPEQRAAVTTTDGPVLVLSGAGTGKTRVLTARLAQILATRPVRPWQVLAVTFTNRAARE 87

Query: 68  IHERIEG-LGVDTSRLWIGTIHSFCLEWILKPYGIYHEALERGYRVIDQHEREKILETLC 126
           + ER    +G    ++W+GT H+  +  +L+ +G     L  G+ ++D  ++ ++L+ + 
Sbjct: 88  MRERAGAMIGPMAEQVWLGTFHALGVR-MLRRHGDL-VGLRSGFTILDADDQLRLLKQIL 145

Query: 127 KPYQKPKITFWDCEFYFTETGYVLSCPQAWKHTGLHA-------------------ILGQ 167
                 +    D + +  + G  +   Q WK  GL                     +  Q
Sbjct: 146 ------EAEGIDTKKWTPQAG--MGLIQRWKDKGLLPEAVPAGDGGREYAGGRAVDLYKQ 197

Query: 168 YFEKLQESRQIDFELILYYAYQLIVSRPAISVLLGQLFSFVLIDEYQDTKRIQYSIVTAI 227
           Y ++L      DF  +L +   +    P +     ++F ++L+DEYQDT   QY +   +
Sbjct: 198 YQQRLAVVNAADFGDLLLHCLTIFTKHPDVLADYSKMFHYILVDEYQDTNVAQY-LWLRL 256

Query: 228 LKAGQGATKAFIVGDPNQAIYQSLG---GYPIAFE-DFRAMAGIDLKKLELSKNYRSSER 283
           L  G G      VGD +Q+IY   G   G  + FE DF    G  + +LE  +NYRS+  
Sbjct: 257 LARGHG--NICCVGDDDQSIYSWRGAEVGNILRFEADF---PGATVVRLE--RNYRSTPT 309

Query: 284 II 285
           I+
Sbjct: 310 IL 311



 Score = 37.7 bits (86), Expect = 2e-06
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 512 ITISTIHGVKGAEFDVVIAYALLEDMVPHFN--DPNGQES---AMKLLYVIGSRARK 563
           +T+ T+H  KG EFD V      E++ PH    D NG E+     +L YV  +RARK
Sbjct: 567 VTLMTLHAAKGLEFDTVFLPGWEEEIFPHRRALDENGAEALEEERRLAYVGLTRARK 623