Pairwise Alignments

Query, 794 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Variovorax sp. SCN45

Subject, 853 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  347 bits (891), Expect = 1e-99
 Identities = 198/389 (50%), Positives = 258/389 (66%), Gaps = 21/389 (5%)

Query: 415 ERRRAEQELRALAESLECKVQERTAELMK--------------AEATLRQSQKMEAVGQL 460
           ER RAEQ LR L E+LE ++QERT  L +              A+  LRQ+QKMEAVGQL
Sbjct: 425 ERWRAEQALRELNETLESRIQERTQALAEVYERLLKEMASREQAQEALRQAQKMEAVGQL 484

Query: 461 TGGLAHDFNNLLGAISGSLELLKRKLED--NPGLSRYVDIGQTATKRAAALTHRLLAFSR 518
           TGG+AHDFNN+L  I G L+L++R ++   +    R++D   T+  RAAALTHRLLAF+R
Sbjct: 485 TGGIAHDFNNMLTGIIGGLDLIQRYIQSGRHGETQRFIDAAVTSANRAAALTHRLLAFAR 544

Query: 519 QQTLEPKVVKVNQLVGGFEELVRRAIGPQVALEVVAGIGIWPVHVDPGQLENALLNLCIN 578
           +Q L  K V++NQL+    +L+ R +G  + ++     G+WPV  D  QLE+ALLNL IN
Sbjct: 545 RQPLNLKRVELNQLIESMHDLLSRTLGRHIHIDNRLQQGLWPVSSDENQLESALLNLVIN 604

Query: 579 ARDAMPGGGRLVIETANRSLDELAASEHQMLPGQYVSISVSDNGSGMPVDVIARAFDPFF 638
           ARDAMP GG L++ET N  L         +  G+YV + ++D+G GM   V+A  F+PFF
Sbjct: 605 ARDAMPDGGSLLLETRNVELYS-QGEVGDLAAGRYVILRLTDSGCGMSAKVLASVFEPFF 663

Query: 639 TTKPIGVGTGLGLSMVYGFARQSGGHARIYSEVGTGTNVCMYLPRYEGGECAADDLPASN 698
           TTKPIG GTGLGLSMVYGF RQ+GGH +I SE G GT V +YLP YE    AA  LPA  
Sbjct: 664 TTKPIGQGTGLGLSMVYGFTRQAGGHIQIASEPGEGTQVSLYLPVYEEEGVAA--LPAKE 721

Query: 699 -QVPQSTGVGEIVLVVDDEASVRMLMVETLVDLGYRVLHAADGPQAVELLQANRSVALLV 757
            + P     GE VLVV+D+ +VR+L+++ L  LGY+ L AADG  A+ +L+++ +V +LV
Sbjct: 722 IEGPLRAKQGETVLVVEDDPAVRLLVIDVLEMLGYQALEAADGNAAIRILESSAAVDMLV 781

Query: 758 TDVGLPKGMNGRQVADAGRLINPSLRVLF 786
           TDVGLP GMNGRQ+ADA R   P L VLF
Sbjct: 782 TDVGLP-GMNGRQLADAARQQRPGLPVLF 809



 Score = 65.9 bits (159), Expect = 9e-15
 Identities = 56/201 (27%), Positives = 86/201 (42%), Gaps = 16/201 (7%)

Query: 76  EAFWNRLSIGPVHDSAGEV--IYFFASQVDATFERERLLGLESSNASLSAELAVRVREVE 133
           E  W  L++ P+ D+   +  +    S+       E  L   + +  LSAE+        
Sbjct: 126 EQAWFDLALSPIRDTPRSIGGLLLCLSETSERVRTETRLSQTALHYKLSAEVH------R 179

Query: 134 TGEARLRAATDAAEL-GIWRLDLTTSSLYASVHCKRNFGRGESLP--FTYEDLQEAVHPD 190
             E RL+ A +A++L GIW   + +S +       R     +S P   + E   + VHPD
Sbjct: 180 ASEQRLQLALEASDLIGIWDWAIQSSEIPPGAELSRILPVAQSGPKGLSSEAFFDHVHPD 239

Query: 191 DLPRMRSAVLRTIETGDDYRIEYRVVRPDGQLAWVRIVGRLERDASGHPLSMAG-----T 245
           D+PR+R+A+ R I    +    YR+   +G   W    GR   D  G PL   G     T
Sbjct: 240 DVPRLRAALQRCITERGNLDERYRLRGENGATRWALARGRCHCDEQGRPLRFPGAVMNIT 299

Query: 246 SQDITDVMLALRRNELLEMLD 266
           SQ  ++  L  R  EL  + D
Sbjct: 300 SQQASEDALRQREAELKMITD 320