Pairwise Alignments

Query, 662 a.a., Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) from Variovorax sp. SCN45

Subject, 633 a.a., penicillin-binding protein 2 from Klebsiella michiganensis M5al

 Score =  441 bits (1133), Expect = e-128
 Identities = 247/620 (39%), Positives = 364/620 (58%), Gaps = 17/620 (2%)

Query: 2   NEIRNAAAELSRFRRRVVVVGCVVLFGFGLIGARLAFLQVVRHEELADRAESNRTAIVPI 61
           N  R+  AE S F RR +V    +L   G++ A L  +Q+VR+ +   R+  NR  +VPI
Sbjct: 5   NSFRDYTAESSLFVRRALVAFLGILLLTGVLIANLYNVQIVRYTDYQTRSNENRIKLVPI 64

Query: 62  VPNRGQILDRNGVVLASNYAAYTLEITPSKVGDLNAALDELDAIVEITPNDRRRFKRLRE 121
            P+RG I DRNG  LA N   Y LE+ P KV ++   LD L  ++++T +D   FK+ R 
Sbjct: 65  PPSRGIIYDRNGTPLALNRTIYQLEMMPEKVDNVQQTLDALRDVIDLTDDDVANFKKERA 124

Query: 122 DSRSFDSIPIRTRLSDEEVARFAAQRYRFPGIEIKARLFRSYPHGEVASHVIGYIGRINQ 181
            S  F SIP++  LS+ +VARFA  +YRFPG+E+K    R YP+    +HVIGY+ +IN 
Sbjct: 125 RSHRFTSIPVKVNLSEVQVARFAVNQYRFPGVEVKGYKRRYYPYNSALTHVIGYVSKIND 184

Query: 182 REKTAMEDWDEEEQANYRGTDYIGKLGIEQSYEKTLHGQTGVEQMETSAGGRAVRRLARH 241
           ++   ++   E + ANY  T  IGKLGIE+ YE  LHGQTG E++E +  GR +R+L   
Sbjct: 185 KDVDRLDK--EGKLANYASTHDIGKLGIERYYEDVLHGQTGYEEVEVNNRGRVIRQLKEV 242

Query: 242 PATPGNTVMLSLDIKLQKLVEDMFGERRGALVAIDPKTGEILAFVSKPTFDPNLFVEGID 301
           P   G  + L+LD+KLQ+ +E +    R A+V  DP+TG ILA VS P++DPNLFV+GI 
Sbjct: 243 PPQAGRDIYLTLDLKLQQYIETLLAGSRAAVVVTDPRTGAILALVSTPSYDPNLFVDGIS 302

Query: 302 HESWAALIESIDKPLLNRALRGTYPPGSTYKPFMALAALETGARAADKIENDPGSYSFGG 361
            + ++ L+   + PL+NRA +G YPP ST KP++A++AL  G    +    DPG +   G
Sbjct: 303 SKDYSGLLNDPNTPLVNRATQGVYPPASTVKPYVAVSALSAGVITRNTSLFDPGWWQLPG 362

Query: 362 ---RTFLSHRGGLGGVDMHRAIQFSSNTYFYSLANEMGVDLIHEFMAPLGFGQFTGIDLL 418
              R     + G G +++ +A++ S++TYFY +A +MG+D + E+M   G+G +TG+DL 
Sbjct: 363 SDKRYRDWKKWGHGHLNVTKALEESADTYFYQVAYDMGIDRLSEWMGKFGYGHYTGVDLA 422

Query: 419 GESRGVLPSKAWKRAAYRRPDMKTWHAGETISLGIGQGYNSFTMLQLASANATLANGGMH 478
            E  G +P++ WK   +++P    W+ G+TI +GIGQGY + T +Q+  A   L N G+ 
Sbjct: 423 EERSGNMPTREWKLKRFKKP----WYQGDTIPVGIGQGYWTATPIQMNKALMILINDGVV 478

Query: 479 YRPHLVRAIKDTVTE-EIVAQVQPQARDLGYAQKHV-DVVRNAMVAVTKGGTGT--RVFA 534
             PHL   ++ TV + + V  VQP    +G       ++ ++ M  V   G GT  + FA
Sbjct: 479 KVPHL---LQSTVEDGKPVPWVQPHEPPVGDIHSGFWEIAKDGMFGVANRGNGTAHKYFA 535

Query: 535 GAAYTSAGKTGTAQAVSLGPKARASGKALEERQRDHALYMAFAPAEAPTIAVAAIVENAG 594
            A Y  A K+GTAQ   L      +   + ER RDH L  AFAP   P +AVA I+EN G
Sbjct: 536 SAPYKIAAKSGTAQVFGLKANETYNAHRIAERLRDHKLMTAFAPYNNPQVAVAIILENGG 595

Query: 595 FGAAHAAPIVRRVFDYWIAG 614
            G A    I+R++ D+ + G
Sbjct: 596 AGPA-VGTIMRQILDHIMLG 614