Pairwise Alignments

Query, 518 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Variovorax sp. SCN45

Subject, 549 a.a., AMP-binding protein from Methanococcus maripaludis S2

 Score =  162 bits (410), Expect = 3e-44
 Identities = 140/537 (26%), Positives = 237/537 (44%), Gaps = 53/537 (9%)

Query: 13  TVAELIHAHALRDAAHTALLLDGQSL--DYAALDAQMDRVAAALQRDGLKPGDVIAISAA 70
           T+ E     A +D     L+   ++L   Y   D + D +A  L   G+K GD I I A 
Sbjct: 7   TIGEFFEKQAQKDPDREFLVYPDRNLRFTYKEFDERTDLLAKGLLEIGIKKGDHIGIWAR 66

Query: 71  TSLGYAVVFLGAVRAGVAVAPLAPDSTPEGLAAMVADSGVQLFFVDEA---VGQATAGTP 127
               +        + GV +  +        LA ++  S ++   + ++   V        
Sbjct: 67  NVPDWLTFMFATAKIGVVLVTVNTAYKSHELAYVMKQSDMKALAIIDSFRDVNYLEILYE 126

Query: 128 GVPRIALDDSG---------------VGAP-------------LSGWLAPAGAQPEPVRL 159
            VP +     G               VG               L  +++          L
Sbjct: 127 LVPELKTSQRGKLNSEEFPYLKNVIYVGQEKHRGMYNTTELMLLGNYVSDEKLIEAKKGL 186

Query: 160 QPDAPFNIIYSSGTTGTPKGIMMPH------AFRWAQVKLFTSLGYGPDAVTLVSIPLYS 213
             D   N+ Y+SGTTG PKG+M+ H       +   + + FT      +    + +PL+ 
Sbjct: 187 DSDDVINMQYTSGTTGFPKGVMLTHKNILNNGYYIGEKQKFTE-----EERLCLPVPLFH 241

Query: 214 NMTLS-SFFPALSLGAKVVLMRKFDAGGYLELAQAHRATHSMMVPVQFQRIMAWPDFDRY 272
              +       L+ G  +V++  FD    L   Q  + T    VP  F    + P F+ +
Sbjct: 242 CFGIVLGVLALLTHGGTLVMLEIFDPLLVLAAIQKEKCTAVYGVPTMFIAEFSHPMFEMF 301

Query: 273 DLSSFRMKSCGSAPFPV-ALKADVLARWPGGLTEYYGMTEGGGVCALPAHERP--DKLHT 329
           DLSS R      +  P+ A+K  +   +   +T  YG+TE   V  + + + P   ++ +
Sbjct: 302 DLSSLRTGIMAGSTCPIEAMKKVMSDMYMREITISYGLTEASPVFTMTSVDDPFEKRVES 361

Query: 330 VGKPAPGHDMRVIDDE-GRELPRGDIGEIVGRSGTMMVGYHNLPQKTAEAEWFDAEGRRF 388
           VGK  P  ++++ID E G  L  G++GEI  R   +M GY+ +P+KTAE      E   +
Sbjct: 362 VGKAMPHCEVKIIDPETGETLAPGNVGEICCRGYNVMKGYYKMPEKTAEV----IEKDGW 417

Query: 389 IRSGDTGRFDEDGYLVLLDRKKDMIISGGFNVYPVDLEAVLRSHPDVDEAAVFGVPSQRW 448
           + SGD    DEDGY  ++ R KDMII GG N+YP ++E  L + P +++A V G+P +++
Sbjct: 418 LHSGDLAVEDEDGYYKIVGRIKDMIIRGGENIYPREIEEFLYTMPGINDAQVVGIPDEKY 477

Query: 449 GESPMACVVLREAATVAPDALREWANERLGKAQRLVDLRVVQSLPRSDIGKVLKRQL 505
           GE   A V+ +E   +  + +R++A E++ + +    + VV+  P +  GK+ K +L
Sbjct: 478 GEIVGAFVIPKEGYEIKEEDVRDFALEKIARYKVPKHVFVVEEFPMTASGKIQKFKL 534