Pairwise Alignments

Query, 518 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Variovorax sp. SCN45

Subject, 578 a.a., AMP-binding family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  166 bits (420), Expect = 2e-45
 Identities = 149/533 (27%), Positives = 238/533 (44%), Gaps = 58/533 (10%)

Query: 23  LRDAAHT-----ALLLDGQSL--DYAALDAQMDRVAAALQRDGLKPGDVIAISAATSLGY 75
           L D A+T     A++++ Q +  +Y    A++D +AA L + G+ PGD I I +  ++ +
Sbjct: 42  LDDIANTYPEQLAVVVNHQDIRWNYRQYLARIDALAAGLLKLGIGPGDRIGIWSPNNIEW 101

Query: 76  AVVFLGAVRAGVAVAPLAPDSTPEGLAAMVADSG---------------VQLFFV----- 115
            +      + G  +  + P   PE L   + + G               +Q+ +      
Sbjct: 102 CLTQFATAKIGAIMVCINPAYRPEELQYALTNVGCRAVICADKFKSSNYLQMLYTLAPEL 161

Query: 116 -DEAVGQATAGT----PGVPRIALDDSGVGAPLSGWLAPAGAQPEPVR------LQPDAP 164
            + A GQ  A        V R+  + S         L    A  + +       L P   
Sbjct: 162 KECAAGQLQAKALPELQFVIRMGAEKSPGMLNFDDLLVEVSADDKAMLERIANGLSPYDA 221

Query: 165 FNIIYSSGTTGTPKGIMMPH------AFRWAQVKLFTSLGYGPDAVTLVSIPLYS--NMT 216
            NI ++SGTTG+PKG  + H       +  A+   FT      D    + +PLY    M 
Sbjct: 222 INIQFTSGTTGSPKGATLSHHNILNNGYLVAEAMKFTC-----DDKLCIPVPLYHCFGMV 276

Query: 217 LSSFFPALSLGAKVVLMRKFDAGGYLELAQAHRATHSMMVPVQFQRIMAWPDFDRYDLSS 276
           L +        A V     FD    LE+ +  R T    VP  F   +  P+F R+DLSS
Sbjct: 277 LGNLVCLAKGAAAVFPGDSFDPLTTLEVVERERCTALHGVPTMFIAELEHPEFTRFDLSS 336

Query: 277 FRMKSCGSAPFPVALKADVLA-RWPGGLTEYYGMTEGGGVCALPAHERP--DKLHTVGKP 333
            R      A  P  +   V    +   +   YG TE   +  +   + P   ++ TVG+ 
Sbjct: 337 LRTGVMAGATCPEEVMRRVQQLMYMQEVLIGYGQTECSPLNHITEIDSPVEKRVLTVGRA 396

Query: 334 APGHDMRVIDDEGRELPRGDIGEIVGRSGTMMVGYHNLPQKTAEAEWFDAEGRRFIRSGD 393
            P  +++++D+ G  LP    GE+  R   +M  Y N P+KTA     D EG  ++ SGD
Sbjct: 397 LPHTEVKIVDEFGEVLPINQPGEVCSRGYCIMQCYWNDPEKTAAT--IDREG--WLHSGD 452

Query: 394 TGRFDEDGYLVLLDRKKDMIISGGFNVYPVDLEAVLRSHPDVDEAAVFGVPSQRWGESPM 453
            G+ DE GY+ ++ R KDMII GG N+YP ++E  L +H DV +AAVFGV S ++GE   
Sbjct: 453 IGQMDEQGYVQIVGRIKDMIIRGGENIYPREIEEKLYTHKDVQDAAVFGVHSDKYGEEVC 512

Query: 454 ACVVLREAATVAPDALREWANERLGKAQRLVDLRVVQSLPRSDIGKVLKRQLR 506
           A + +R  AT+  + +R +  E+    +    ++ V   P +  GK+ K ++R
Sbjct: 513 AWIKVRSGATIKEEDIRHFLTEKFAYFKVPRYIKFVDQYPMTVTGKIQKFKMR 565