Pairwise Alignments

Query, 393 a.a., Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 378 a.a., extracellular ligand binding domain-containing protein from Phaeobacter inhibens DSM 17395

 Score =  114 bits (285), Expect = 5e-30
 Identities = 95/388 (24%), Positives = 164/388 (42%), Gaps = 18/388 (4%)

Query: 6   LAAAAAAVVLQSGALAQNAIKLGVVNIDTGPFAVSGAFVNDGAAFAVEQLNAQGGALGRK 65
           LA A + + L +GA      K+G++   +G  A  G  V DG   A+EQ           
Sbjct: 9   LATAVSTLALAAGA----ETKIGMITTLSGGGAGLGVDVRDGFMLAMEQAGRDD------ 58

Query: 66  YELVTQNHAGTPASAIAAATRLVEQQGVSFFTGLNPSGTSLAIASKMPGLNALFIDATAA 125
            E+V ++    P SA+  A ++++ + V   TG+  S  ++A+          ++   A 
Sbjct: 59  IEVVIEDDQRKPESAVQIADQMIQSEKVDIMTGIIWSNLAMAVVPAATAQGVFYLSPNAG 118

Query: 126 SDDLTGKNCGANYFRVGITDGMMVNSFREQTKASGIKNWDLLMADIAVGHDTAKRFAAAM 185
              L GK C  NYF V   +  +  +       +G+KN  +L  +   G D    +    
Sbjct: 119 PSALAGKRCHENYFNVAWQNDNLHEAAGAYANDAGLKNSYILAPNYPAGKDALTGYKRMY 178

Query: 186 QESGGKVNKTLFAPITASDLGSYIAQLLDKPADGLLMYYPSSGGIALVKQQQAFKLFEKY 245
           Q   G +    +  +  +D  + IAQ+    AD +  + P   GI+ +KQ     +    
Sbjct: 179 Q---GDLAGETYTKLGQTDYAAEIAQIRASGADSVYFFLPGGMGISFLKQYADSGV--DL 233

Query: 246 KTVLSASMVNEILIGAHGDASVGLWSAQSYFWSMPGDRNAAFVKAFEARYKRKPTYIDAD 305
             V  A   ++ ++ A G A++G+ +   +   +    N AFV AFE +Y+R P+   + 
Sbjct: 234 PVVGPAFSFDQGILQAVGGAALGIKNTSQWNKDLDNPANTAFVAAFEQKYERLPSLYASQ 293

Query: 306 AYMSFELVHQAILKAKSADVPAVRAALSGLKASTVVGDVEMRAADHQLLRPLVVVQAAKA 365
            Y +  L+  A+ KA   D  A RAAL   +  +V GD +     H +    V     + 
Sbjct: 294 GYDTANLILSALDKASVDDKEAFRAALKAAEFESVRGDFKFGDNHHPIQNIYVREVIQEG 353

Query: 366 SEGKGEIVMKSIEPTAQIAPPVSSECKM 393
                +I+   +E     A   ++ECKM
Sbjct: 354 DVFTNKIIATGLE---NHADAYAAECKM 378