Pairwise Alignments

Query, 384 a.a., Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.8.1) from Variovorax sp. SCN45

Subject, 389 a.a., isovaleryl-CoA dehydrogenase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  260 bits (664), Expect = 5e-74
 Identities = 144/368 (39%), Positives = 219/368 (59%), Gaps = 4/368 (1%)

Query: 11  RDSVRRMAERHVAPIAAEIDENDRFPTELIPVYGDIGLLQLWVPEAYGGPGANLTMVCMA 70
           RD+V   A+  +APIAA++D ++ FP E+ PV G +GLL + VPE YGG         +A
Sbjct: 20  RDAVHDFAQHEIAPIAAKVDHDNAFPNEIWPVLGGMGLLGVTVPEEYGGANMGYLAHVVA 79

Query: 71  REEISRHSEACGLLAG-ETTMFVLPLMHFGTEAQKQRFLPIVAQGRTLTAIALSEPGAGS 129
            EEISR S + GL  G  + + V  +   G  AQK ++LP +  G  + A+A+SEP AGS
Sbjct: 80  MEEISRASASIGLSYGAHSNLCVNQINRNGNAAQKAKYLPKLVSGEHIGALAMSEPNAGS 139

Query: 130 DVSAIRTRAVRDGDSYVINGQKQWCSFGSVADYIMVFAKTSDAGGVDNISPFIVDVKTMP 189
           DV +++  A ++GD Y++NG K W + G  A+  +++AKT    G   I+ FIV+ +   
Sbjct: 140 DVVSMKLHARKEGDRYILNGNKMWITNGPDANTYVIYAKTDLTKGAHGITAFIVE-RGFK 198

Query: 190 GVSFGKKERKMGMRGAVNVPVYLDNVRVPAENMLGEEGKGFRAAMRALDLNRPAIAAASV 249
           G S  +K  K+GMRG+    +  ++V VP EN+LG    G +  M  LD  R  ++   +
Sbjct: 199 GFSQAQKLDKLGMRGSNTCELVFEDVEVPEENILGGLNNGVKVLMSGLDYERVVLSGGPL 258

Query: 250 GLAQGALDAAVAYAQQRKQFKRFISEFQGVQFMLADMAMQIQAARCLLYECTRAGDRGEW 309
           G+    +D  V Y  +R+QF + I EFQ VQ  LADM   + AA+  +Y   ++ DRGE 
Sbjct: 259 GIMNACMDIVVPYIHEREQFGKSIGEFQLVQGKLADMYTGMNAAKAYVYSVAKSCDRGET 318

Query: 310 DRLPMLASMAKCFASDMAMKVTTDAVQVLGGYGYTKDYPVERMMRDAKLNQIFEGTNQIQ 369
            R    A+ A  +++++A K+  DA+Q+LGG GY  +Y   R++RDAKL +I  GT++I+
Sbjct: 319 TRKD--AAGAILYSAELATKMALDAIQLLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIR 376

Query: 370 RVVIAREL 377
           R++I REL
Sbjct: 377 RMLIGREL 384