Pairwise Alignments

Query, 518 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Variovorax sp. SCN45

Subject, 549 a.a., AMP-binding protein from Methanococcus maripaludis S2

 Score =  210 bits (535), Expect = 9e-59
 Identities = 159/505 (31%), Positives = 237/505 (46%), Gaps = 37/505 (7%)

Query: 28  TWKEVGERVPRMAAALRSLGVRDGAFVAILAMNSDRYLELFFSVPWAGGALAPLNIRWSA 87
           T+KE  ER   +A  L  +G++ G  + I A N   +L   F+    G  L  +N  + +
Sbjct: 35  TYKEFDERTDLLAKGLLEIGIKKGDHIGIWARNVPDWLTFMFATAKIGVVLVTVNTAYKS 94

Query: 88  VENVYALTDSNAEVLFVDDSFLD-----------------QMDFLRAER-PSIRHVIYMG 129
            E  Y +  S+ + L + DSF D                 Q   L +E  P +++VIY+G
Sbjct: 95  HELAYVMKQSDMKALAIIDSFRDVNYLEILYELVPELKTSQRGKLNSEEFPYLKNVIYVG 154

Query: 130 DGPTPAGMLAYEELVAQHAPMPDADRKE-------DDLYVIFYTGGTTAHPKGVAMSHRG 182
                 GM    EL+     + D    E       DD+  + YT GTT  PKGV ++H+ 
Sbjct: 155 Q-EKHRGMYNTTELMLLGNYVSDEKLIEAKKGLDSDDVINMQYTSGTTGFPKGVMLTHKN 213

Query: 183 VYLATCCYLALLPSV--EDLTFLYVAGYFHFAGASALWYITLAAGTHAILPKFEALPVMK 240
           + L    Y+        E+   L V  +  F     +  +    GT  +L  F+ L V+ 
Sbjct: 214 I-LNNGYYIGEKQKFTEEERLCLPVPLFHCFGIVLGVLALLTHGGTLVMLEIFDPLLVLA 272

Query: 241 AIGQHRVTNAVLVPTMVNMLLSHPDFKQYDLTSLKTCIYGGSPMPEGLMLRAMKMVPSWG 300
           AI + + T    VPTM     SHP F+ +DL+SL+T I  GS  P   M + M  +    
Sbjct: 273 AIQKEKCTAVYGVPTMFIAEFSHPMFEMFDLSSLRTGIMAGSTCPIEAMKKVMSDMYMRE 332

Query: 301 FYQIYGMTETGGFATMLRWRDHIVSGENASRLRSAGQAGFGNEVRVVRIE-GDDADVGEI 359
               YG+TE     TM    D         R+ S G+A    EV+++  E G+    G +
Sbjct: 333 ITISYGLTEASPVFTMTSVDDPF-----EKRVESVGKAMPHCEVKIIDPETGETLAPGNV 387

Query: 360 GEIIVRSDFLMMGYLNNPEATAACL-RDGWMHTGDAGYLDADGFLYVADRVKDMIVSGGE 418
           GEI  R   +M GY   PE TA  + +DGW+H+GD    D DG+  +  R+KDMI+ GGE
Sbjct: 388 GEICCRGYNVMKGYYKMPEKTAEVIEKDGWLHSGDLAVEDEDGYYKIVGRIKDMIIRGGE 447

Query: 419 NVYSIEPERALFLHPAVREAAVIGIPSEQWGESVHAVVVLKDGASATAEELIAHCRTLIG 478
           N+Y  E E  L+  P + +A V+GIP E++GE V A V+ K+G     E++       I 
Sbjct: 448 NIYPREIEEFLYTMPGINDAQVVGIPDEKYGEIVGAFVIPKEGYEIKEEDVRDFALEKIA 507

Query: 479 GYKCPRSIEFRADPLPVTPVGKVRK 503
            YK P+ + F  +  P+T  GK++K
Sbjct: 508 RYKVPKHV-FVVEEFPMTASGKIQK 531