Pairwise Alignments

Query, 292 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 313 a.a., integral membrane protein of the ABC-type Nat permease for neutral amino acids NatD from Synechococcus elongatus PCC 7942

 Score =  127 bits (320), Expect = 2e-34
 Identities = 108/314 (34%), Positives = 160/314 (50%), Gaps = 30/314 (9%)

Query: 2   WIDVVVSGLTAGSLYCLVAVGFNILYRPTKVFNFAQGDLVMVGA-MASAL---------L 51
           W+  +++GL  G +Y L A+G+ +++    V NFA G +  +GA +  AL         L
Sbjct: 3   WLQPLINGLAIGGVYALFALGYTLVFSILGVINFAHGAVFTLGAYLTYALVGGRFSFNGL 62

Query: 52  MTQWHWPWVPAFAAAAAAVALLA----LLEERVAVAPVLRRSASGTGWIITTLAVAMIMT 107
           +     P+   FA A    +LLA    LL E+VA  P+ RR A     +I++L VA+ + 
Sbjct: 63  LANAALPFSLPFALALLLGSLLAGGASLLIEQVAFRPLRRRQADPLLTLISSLGVAVFIV 122

Query: 108 NIVGKVWGADPIVVPAPAPLSNDM-----LGLS--AVNISSYQAALIVLTIALVAVVE-L 159
           N++  + GA+  +   P+ +  D+     LG S   + I + Q  L V+ IA+ +++  L
Sbjct: 123 NLIQILVGAE--IYTFPSNIYGDLPSAINLGSSDRPIQIRTVQIILFVVAIAMFSLLTWL 180

Query: 160 LYASLWGKATLAVAEDRDAALLRGIDPVAISRWSFALGGAFAALTGALAAPVLSASTG-- 217
           +  +  G A  AVAED   A L GIDP    R +F L G    L G L    +S  TG  
Sbjct: 181 INGTRVGHALKAVAEDATTASLLGIDPDRYIRLTFFLSGVLGGLAGTLVGTSVSI-TGPY 239

Query: 218 LGAMLLLKGFAAAAIGGLGSNRGALLAGYLIGMAEAASALLLSPGYHNAVMLVLVLAVLL 277
            G    LKG +   +GGLG+  G +  G L+G+AEA      S GY +AV   L+ A+LL
Sbjct: 240 FGIAYGLKGLSVMVLGGLGNIPGTIAGGLLLGLAEAWVPPQWS-GYRDAVAFALLFAMLL 298

Query: 278 AKPGGLFSSLEART 291
            +P GLFS   ART
Sbjct: 299 IRPQGLFS--RART 310