Pairwise Alignments

Query, 292 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 296 a.a., integral membrane protein of the ABC-type Nat permease for neutral amino acids NatD from Synechococcus elongatus PCC 7942

 Score =  132 bits (332), Expect = 9e-36
 Identities = 87/285 (30%), Positives = 147/285 (51%), Gaps = 11/285 (3%)

Query: 5   VVVSGLTAGSLYCLVAVGFNILYRPTKVFNFAQGDLVMVGA----MASALLMTQWHWPWV 60
           + ++GL  GSL  L A G  ++Y   ++ NFAQG+ + +GA    +A++L ++ W     
Sbjct: 18  LAINGLATGSLLALAATGLTLIYGILRLTNFAQGEFLTLGAYFTLVANSLGLSLWL---- 73

Query: 61  PAFAAAAAAVALLALLEERVAVAPVLRRSASGTGWIITTLAVAMIMTNIVGKVWGADPIV 120
            A    A A   L LL E V   P+ R+  + T  II T+ +++ + N+V  +WGA    
Sbjct: 74  -AIPLGAIATIALCLLGEAVLWEPLRRQRVNTTTLIILTIGLSLFLRNLVILIWGAGNQA 132

Query: 121 VPAPAPLSNDMLGLSAVNISSYQAALIVLTIALVAVVELLYASLWGKATLAVAEDRDAAL 180
                  +  + GL  + ++S    +I    ALV +  +L  +  GK   A+A+D D A 
Sbjct: 133 YRLAVQPALTLWGLR-ITLNSL-LVVIGAAAALVLLHWVLQRTSIGKGMRAIADDPDLAR 190

Query: 181 LRGIDPVAISRWSFALGGAFAALTGALAAPVLSASTGLGAMLLLKGFAAAAIGGLGSNRG 240
           + G+    + RW++ + G   A+ G L   + +    +G  L+L  FA+A +GG+GS  G
Sbjct: 191 VSGVPVETVIRWTWVIAGGLTAIAGGLYGLITAVRPTMGWNLILPLFASAILGGIGSPYG 250

Query: 241 ALLAGYLIGMAEAASALLLSPGYHNAVMLVLVLAVLLAKPGGLFS 285
           A+  G ++G A+  S   L   Y  AV  V+++ VL+ +P GLF+
Sbjct: 251 AIAGGLILGFAQELSTYWLPAEYKLAVAFVILIGVLVIRPQGLFA 295