Pairwise Alignments

Query, 292 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 297 a.a., inner-membrane translocator (RefSeq) from Shewanella loihica PV-4

 Score = 97.4 bits (241), Expect = 3e-25
 Identities = 73/296 (24%), Positives = 135/296 (45%), Gaps = 11/296 (3%)

Query: 3   IDVVVSGLTAGSLYCLVAVGFNILYRPTKVFNFAQGDLVMVGAMASALLMTQWHWPWVPA 62
           I ++++GL  G LY +V + F ++Y+ T++ NFAQG+ ++VGA      +T +  P+   
Sbjct: 7   IQLIINGLIVGLLYGVVGMCFVLVYKSTQIVNFAQGEFLLVGAWVCWAFLTYFQLPFFVG 66

Query: 63  FAAAAAAVALLALLEERVAVAPVLRRSASGTGWIITTLAVAMIMTNIVGKVWGADPIVVP 122
           F      +A+  +L + + + P++         I+ T+ +++   ++   ++G  P    
Sbjct: 67  FLFTLCFMAVFGVLLQMIVLRPMIGEPIISV--IMVTIGLSIFFQSLTKWIFGVSP--QS 122

Query: 123 APAPLSNDMLGLSAVNISSYQAALIVLTIALVAVVELLYA-SLWGKATLAVAEDRDAALL 181
            P       + +  +NI        V+ I ++A   L +  S  G A  A A D+  A  
Sbjct: 123 YPQVFDTQSIAIFGLNIELAYLMSTVIAILIMAAFFLFFKYSKHGLAMRATAFDQQVAQS 182

Query: 182 RGIDPVAISRWSFALGGAFAALTGALAAPVLSASTGLGAMLLLKGFAAAAIGGLGSNRGA 241
            GI    +   S+ +    +A  G +   V   S  L + + +K F A  +GGL S  GA
Sbjct: 183 LGISVKQVFAMSWGIAATVSATAGVVIGMVNGVSDSL-STIGIKVFPAVILGGLDSIVGA 241

Query: 242 LLAGYLIGMAEAASALLLSPGYHNAVM-----LVLVLAVLLAKPGGLFSSLEARTV 292
           ++ G +IG+ E  +    S   H   M       ++L +L  KP GLF + +   +
Sbjct: 242 IVGGVVIGVLENIAEFFDSQWLHIGNMYDIAPFYVLLVILWFKPYGLFGTRDIERI 297