Pairwise Alignments

Query, 290 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 295 a.a., Branched-chain amino acid ABC-type transport system, permease components from Pseudomonas stutzeri RCH2

 Score =  142 bits (357), Expect = 1e-38
 Identities = 96/288 (33%), Positives = 156/288 (54%), Gaps = 9/288 (3%)

Query: 1   MSEFLEYSLLGLLSGGVMALIALSFVLIYKGTGVVNFAVGEVMMLGAYIYYAGAVTFGLP 60
           +S  L   LLGL++G   AL++L   +I+    ++NFA G   MLGA++ + G    G+ 
Sbjct: 9   LSVLLGQLLLGLINGAFYALLSLGLAIIFGLLRIINFAHGAQYMLGAFVAFLGLNYLGVS 68

Query: 61  PWVAFALALAVIGVLAIAIERAVLRPLSGQPAVAVLMATIGMASIVHGGVEAVWG--GDT 118
            W A  LA  V+G L +AIER +LR ++G+  +  L+ T G+A IV G    ++G  G +
Sbjct: 69  YWFALVLAPLVVGCLGMAIERGLLRRIAGEDHLYGLLLTFGLALIVEGSFVKLFGVSGSS 128

Query: 119 LSPPTLLPRTPLLLGEVLIPGTVLGNFAVAAVLIGGFLAFFRYSKT--GIALRATASDPV 176
              P LL R    LG + +P      + + A L+     ++   +T  G  LRA   +P 
Sbjct: 129 YPMPELL-RGGFNLGFMFLP--TYRAWVIVAALVVCLATWYVIERTRLGSYLRAGTENPK 185

Query: 177 TAATLGININYAQRLTWLLSGLVGTFAGVLIASSAGLSPLLASAAL-SVFAAIILGGLDS 235
                GIN+     LT+     +  FAGVL A    ++P + S  L  VFA +++GG+ S
Sbjct: 186 LMQGFGINVPLLVTLTYGYGVALAAFAGVLAAPIYAVTPGMGSNLLIVVFAVVVIGGMGS 245

Query: 236 ILGAIVASLLIGWVESVSAGYLGGKSRDVVPYVVVLAILVVKPYGMFG 283
           ILGAIV  + +G +E ++  +    +  VV ++V++A+L+++P G+FG
Sbjct: 246 ILGAIVTGIAMGLIEGLTKVFYPEAANTVV-FLVMVAVLLIRPAGLFG 292