Pairwise Alignments

Query, 416 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

Subject, 417 a.a., Multidrug efflux membrane fusion protein MexE from Pseudomonas fluorescens FW300-N2E2

 Score =  301 bits (770), Expect = 3e-86
 Identities = 165/352 (46%), Positives = 225/352 (63%), Gaps = 6/352 (1%)

Query: 45  NTPAAPQATPVSVATVASSEINAWDEFSGRLEAVERVDVRSRVAGAVQAVHFREGALVKQ 104
           +T A+     VSVA V    +N WDEF+GRLEA E V++R RV+G +  V F EGALVK+
Sbjct: 28  DTAASMPPAKVSVAKVLEQPVNEWDEFTGRLEAPETVEIRPRVSGQIDEVAFTEGALVKK 87

Query: 105 GDLLVTIDPAPYAAEVERAEAQVASAQARQSFSRSEQERAKRLWDDKAIAQREFDERVNA 164
           GDLL  IDP P+ AEV R EAQ+A A+A  + S +E +R +RL    AI+    D R +A
Sbjct: 88  GDLLFQIDPRPFQAEVRRLEAQLAQARATATRSENEAQRGERLRLSNAISAELADSRTSA 147

Query: 165 GREADANLRAAQASLQSARLNLGYTQVRAPVSGRIGRIEVTVGNLVAAGPGAPVLTTLVS 224
            +EA A   A QA L  A+LNL +T+V +P+SGR+ R  +T GNLV A      LT++VS
Sbjct: 148 AQEARAAAAAIQAQLDLAKLNLSFTRVTSPISGRVSRAAITAGNLVTA--DVTPLTSVVS 205

Query: 225 VSPIYASFDADEQVITRALKDLPTGSSARGQIESIPVQMGTAGLDGTPFTGKLQLIDNQV 284
              +YA FDADE+V  +  +    G   RGQ  + PV MG +  DG P  G++  +DNQV
Sbjct: 206 TDKVYAYFDADERVFLKYTQLARQGQ--RGQ--ATPVYMGLSNEDGNPHQGQMNFVDNQV 261

Query: 285 DAKSGTVRVRASFDNKDGALIPGQFARIRMGQARSDSALLVSERAIGTDQNKKFVMVVGE 344
           + ++GT+R RA FDNKDGA  PG +AR+++  + + +A+L+++ A+GTD  KKFV+V+  
Sbjct: 262 NPQTGTIRGRAVFDNKDGAYTPGLYARLKLVGSGTYAAVLINDEAVGTDLGKKFVLVMDA 321

Query: 345 DSKATYREVTLGASINGLRVVSKGLKAGDRVIVNGLQHIRPGALVAPQQVTM 396
           ++K  YR V LG  I GLR+V  GL   D +IV GLQ  RPGA V P+ V M
Sbjct: 322 ENKPAYRAVELGPKIEGLRIVRSGLSKNDTIIVKGLQRARPGAPVTPETVPM 373