Pairwise Alignments

Query, 416 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

Subject, 379 a.a., MexX family efflux pump subunit from Klebsiella michiganensis M5al

 Score =  189 bits (480), Expect = 1e-52
 Identities = 130/384 (33%), Positives = 203/384 (52%), Gaps = 15/384 (3%)

Query: 20  VTGLTALLAVAAAVVGMYSFKAEANNTPAAPQATPVSVATVASSEINAWDEFSGRLEAVE 79
           VT L++L+  A  + G  +     +  P A Q   VSV  V S+ ++   E  GR  A  
Sbjct: 7   VTLLSSLIISAILLSGCDN---SGDGQPHA-QIPQVSVYVVHSAPLSVTTELPGRTSAYR 62

Query: 80  RVDVRSRVAGAVQAVHFREGALVKQGDLLVTIDPAPYAAEVERAEAQVASAQARQSFSRS 139
             +VR +V G +   +F EG+ V  G  L  IDPA Y A     +   A A+A  + +  
Sbjct: 63  VAEVRPQVNGIILQRNFVEGSDVSAGQSLYQIDPATYQAAYNSTKGDEAKAEAAAAIAHL 122

Query: 140 EQERAKRLWDDKAIAQREFDERVNAGREADANLRAAQASLQSARLNLGYTQVRAPVSGRI 199
             +R   L   K I+Q+E+D+ V   R+ADA++ AA+A+++SAR+NL YT+V +P+SGRI
Sbjct: 123 TVKRYAPLLGTKYISQQEYDQAVATARQADADVIAAKAAVESARINLAYTKVTSPISGRI 182

Query: 200 GRIEVTVGNLVAAGPGAPVLTTLVSVSPIYASFDADEQVITRALKDLPTGSSARGQIESI 259
           G+  VT G LV  G  A  + T+  + PIY           R  ++     +    ++ I
Sbjct: 183 GKSSVTEGALVTNGQ-ADAMATVQQLDPIYVDVTESSNDFMRLKQESLQHGNDTKNVQLI 241

Query: 260 PVQMGTAGLDGTPFT--GKLQLIDNQVDAKSGTVRVRASFDNKDGALIPGQFARIRMGQA 317
                    +G P+T  G LQ  D  VD  +G++ +RA F N   AL+PG F R R+ + 
Sbjct: 242 ME-------NGQPYTLQGALQFSDVTVDESTGSITLRAIFPNPQHALLPGMFVRARIDEG 294

Query: 318 RSDSALLVSERAI-GTDQNKKFVMVVGEDSKATYREVTLGASINGLRVVSKGLKAGDRVI 376
            S +A+LV ++ +  T + +  VM+V + ++   R VT   +I    +V+ GLKAG++VI
Sbjct: 295 VSPNAILVPQQGVTRTPRGEASVMLVNDKNQVETRAVTAAQAIGDKWLVTSGLKAGEKVI 354

Query: 377 VNGLQHIRPGALVAPQQVTMDAKA 400
           V+GLQ +RPG  V  ++ T  + A
Sbjct: 355 VSGLQKVRPGVTVKAEEDTATSVA 378