Pairwise Alignments

Query, 1089 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

Subject, 1056 a.a., The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family from Pseudomonas stutzeri RCH2

 Score = 1381 bits (3574), Expect = 0.0
 Identities = 698/1044 (66%), Positives = 842/1044 (80%), Gaps = 1/1044 (0%)

Query: 1    MNLSKFFIDRPIFAGVLSLLMLIAGLIALRGLPISEYPEVAPPSVVVRAQYPGANPKVIA 60
            MN S+FFI RPIFA VLSL++LI G I+L  LPISEYPEV PP+VVVRA +PGANPKVI 
Sbjct: 1    MNFSQFFIRRPIFAAVLSLVILIGGAISLFQLPISEYPEVVPPTVVVRANFPGANPKVIG 60

Query: 61   ETVATPLEEQINGVEGMLYMGSQATTDGVLTLTVTFRLGTDPDKAQQLVQNRVSQAEPRL 120
            ETVA+PLE+ I GVEGMLYM SQAT DG LTLT+TF LGTD D AQ  VQNRV++  P L
Sbjct: 61   ETVASPLEQAITGVEGMLYMSSQATADGKLTLTITFGLGTDLDNAQVQVQNRVTRTMPTL 120

Query: 121  PEEVRRLGITTVKSAPDLTMVVHLVSPNNRYDINYLRNYAVLNVKDPLARIEGVGQVQIF 180
            P EV+RLG+T  K++PDLTMVVHL SP+ RYD+ YL NYA LNVKD LAR++G+G VQ+F
Sbjct: 121  PTEVQRLGVTVDKASPDLTMVVHLTSPDQRYDMLYLSNYAALNVKDELARLDGIGDVQLF 180

Query: 181  GGGDYSMRVWLDPQKVAQRGLSASDVVAAIRGQNVQAAAGVVGASPGLSGVDMQLSINAQ 240
            G GDYS+RVWLDP+KVA R L+ASDVV AIR QN Q AAG +GA P     D QLSIN Q
Sbjct: 181  GMGDYSLRVWLDPEKVASRNLTASDVVNAIREQNRQVAAGSLGAPPAPGATDFQLSINTQ 240

Query: 241  GRLQSEEEFGDIIVKSGTDGAVTRLRDIGRLEMGAADYSLRSLLNNDPAVGMGVFQAPGS 300
            GRL +EEEF +II+++G DG++TRLRDI R+E+G++ Y+LRSLLNN PAV + VFQ PGS
Sbjct: 241  GRLVTEEEFENIIIRAGEDGSITRLRDIARVELGSSQYALRSLLNNQPAVAIPVFQRPGS 300

Query: 301  NALDISANVRKTMEELNKNMPEGLEYRIAYDPTQFVRASIESVIHTLLEAIMLVVLVVIL 360
            NA++IS +VR  M EL ++ PEG++Y I YDPT FVR SIE+V+HTLLEAI+LVVLVVIL
Sbjct: 301  NAIEISDSVRARMAELKRDFPEGVDYEIVYDPTIFVRGSIEAVVHTLLEAIVLVVLVVIL 360

Query: 361  FLQTWRASIIPLLAVPVSVIGTFAVLHVLGFSINALSLFGLVLAIGIVVDDAIVVVENVE 420
            FLQTWRASIIPL AVPVS+IGTFAV+H+LGFS+NALSLFGLVLAIGIVVDDAIVVVENVE
Sbjct: 361  FLQTWRASIIPLAAVPVSLIGTFAVMHLLGFSLNALSLFGLVLAIGIVVDDAIVVVENVE 420

Query: 421  RNIEAGLTPREATYRAMREVSGPIIAIALVLVAVFVPLAFISGLTGQFYRQFAVTIAIST 480
            RNI  G +P EAT +AM+EV+GPIIA ALVL AVF+P AFISGLTGQFY+QFA+TIAIST
Sbjct: 421  RNIGLGKSPEEATRQAMKEVTGPIIATALVLCAVFIPTAFISGLTGQFYQQFALTIAIST 480

Query: 481  VISAINSLTLSPALAALLLRGHDQPKDALTRGMDRAF-GWLFRGFNKLFHRGSEAYSGGV 539
            VISA NSLTLSPALAA LLR HD PKD  +R +DR F GWLF  FN++F R S  Y G V
Sbjct: 481  VISAFNSLTLSPALAAALLRSHDAPKDGFSRLLDRIFGGWLFAPFNRMFDRASHGYVGLV 540

Query: 540  KNVISRKALMLAIYVALIAVTFGLFKAVPGGFVPAQDKQYLIGFAQLPDGATLDRTDEVI 599
            + ++    + L +YV L+ + +  F + P GFVP QDKQYL+ FAQLPD ATLDRT++VI
Sbjct: 541  RRILRGSGIALVVYVGLVGLGYMGFASTPTGFVPPQDKQYLVAFAQLPDAATLDRTEDVI 600

Query: 600  QRMGEIMKKNPNVEDAIAFPGLSINGFTNSSNSGIVFATLKPFDQRKRPDQSGGAVAGQL 659
            +RM EI  K+P VE+ +AFPGLSINGFTNS NSGIVF  LKPFD+RK P  S  A+A  L
Sbjct: 601  KRMSEIAGKHPGVENTVAFPGLSINGFTNSPNSGIVFTPLKPFDERKDPSLSANAIAADL 660

Query: 660  NGAFAGIQDAFIVMFPPPPVAGLGTTGGFKLQLEDRASVGYDQMDAAVKAFMAKAQQAPE 719
            NG FA IQDAFI +FPPPPV GLGT GGF++Q++DR ++GY+++ + V+  +AK+   PE
Sbjct: 661  NGQFAQIQDAFIAIFPPPPVQGLGTIGGFRVQVQDRGNLGYEELYSQVQNVIAKSADYPE 720

Query: 720  LAGMFTSWQVNVPQLYADIDRTKARQLGVPVTDIFDTMQIYLGSLYANDFNKFGRTYSVR 779
            LAG+FTS+QVNVPQ+ ADIDR KA+  GVP+ +IFDTMQ+YLGSLYANDFN+FGRTY V 
Sbjct: 721  LAGLFTSYQVNVPQVDADIDREKAKTHGVPIDEIFDTMQVYLGSLYANDFNRFGRTYQVN 780

Query: 780  VQADAPYRARAEDVGLLKVRSTSGEMVPLSALMKVNSTFGPERAMRYNGYLAADINGGPA 839
            VQAD  +R   E +G LKVR+  GEMVPLS  + V  + GP+R M YNG+L A+ING  A
Sbjct: 781  VQADQKFRLAPEQIGQLKVRNNRGEMVPLSTFVNVTDSAGPDRVMHYNGFLTAEINGAAA 840

Query: 840  PGYSSGQAQDAITKIAAETLPKGVSFEWTELTYQEILAGNSAFLVFPLAILLVFLVLAAQ 899
            PGYSSGQA+ A+ ++    LP G+S+EWTELTYQ+ILAGN+A  VFPL +LL FLVLAAQ
Sbjct: 841  PGYSSGQAEAAMERLLKAELPNGMSYEWTELTYQQILAGNTAIFVFPLCVLLAFLVLAAQ 900

Query: 900  YESLTLPIAIILIVPMGIMAAMAGVWISGGDNNVFTQIGLIVLVGLSAKNAILIVEFARE 959
            YES +LP+A+ILIVPM +++A+ GV ++G DNNVFTQIGLIVLVGL+ KNAILIVEFA++
Sbjct: 901  YESWSLPLAVILIVPMTLLSAITGVILAGSDNNVFTQIGLIVLVGLACKNAILIVEFAKD 960

Query: 960  LEFAGRTPVQAAIEASRLRLRPILMTSLAFVMGVLPLVLSTGAGSEMRKAMGVAVFAGMI 1019
             +  G   + A +EA RLRLRPILMTS AF+MGV+PLVLS+GAG+EMR AMGVAVF+GM+
Sbjct: 961  KQEEGMDRLAAILEACRLRLRPILMTSFAFIMGVVPLVLSSGAGAEMRHAMGVAVFSGML 1020

Query: 1020 GVTAFGLFLTPVFYVLLRRLAGNR 1043
            GVT FGL LTPVFY+++R     R
Sbjct: 1021 GVTFFGLLLTPVFYLVIRAFVEKR 1044