Pairwise Alignments
Query, 1089 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45
Subject, 1050 a.a., multidrug efflux RND transporter permease subunit OqxB3 from Enterobacter sp. TBS_079
Score = 1250 bits (3234), Expect = 0.0
Identities = 630/1039 (60%), Positives = 794/1039 (76%), Gaps = 4/1039 (0%)
Query: 1 MNLSKFFIDRPIFAGVLSLLMLIAGLIALRGLPISEYPEVAPPSVVVRAQYPGANPKVIA 60
M+ S+FFIDRPIFA VLS+L+ I GLIA+ LP+SEYP+V PPSV VRA+YPGANPKVIA
Sbjct: 1 MDFSRFFIDRPIFAAVLSILIFITGLIAIPLLPVSEYPDVVPPSVQVRAEYPGANPKVIA 60
Query: 61 ETVATPLEEQINGVEGMLYMGSQATTDGVLTLTVTFRLGTDPDKAQQLVQNRVSQAEPRL 120
ETVATPLEE INGVE M+YM S A +DGVL TVTFR GTDPD+AQ VQNRVSQAE RL
Sbjct: 61 ETVATPLEEAINGVENMMYMKSVAGSDGVLVTTVTFRPGTDPDQAQVQVQNRVSQAEARL 120
Query: 121 PEEVRRLGITTVKSAPDLTMVVHLVSPNNRYDINYLRNYAVLNVKDPLARIEGVGQVQIF 180
PE+VRRLGITT K +P LT+VVHL SP +YD Y+RNYA L VKD LAR+ GVGQ+QIF
Sbjct: 121 PEDVRRLGITTQKQSPTLTLVVHLFSPGGKYDSLYMRNYATLKVKDELARLPGVGQIQIF 180
Query: 181 GGGDYSMRVWLDPQKVAQRGLSASDVVAAIRGQNVQAAAGVVGASPGLSGVDMQLSINAQ 240
G G+Y+MR+WLDP KVA RGL+ASDVV A++ QNVQ +AG +GA P D +SINAQ
Sbjct: 181 GSGEYAMRIWLDPDKVAARGLTASDVVTAMQEQNVQVSAGQLGAEPLPKESDFLISINAQ 240
Query: 241 GRLQSEEEFGDIIVKSGTDGAVTRLRDIGRLEMGAADYSLRSLLNNDPAVGMGVFQAPGS 300
GRL +EEEFG+II+K+ DG++ RLRD+ R+EMG+ Y+LRS LNN AVG+G+FQ+PG+
Sbjct: 241 GRLHTEEEFGNIILKTAQDGSLVRLRDVARIEMGSGSYALRSQLNNKDAVGIGIFQSPGA 300
Query: 301 NALDISANVRKTMEELNKNMPEGLEYRIAYDPTQFVRASIESVIHTLLEAIMLVVLVVIL 360
NA+D+S VR M EL PE +++ YDPT FVR SI +V+ TLLEA++LVVLVVIL
Sbjct: 301 NAIDLSNAVRAKMNELATRFPEDMKWAAPYDPTVFVRDSIRAVVQTLLEAVVLVVLVVIL 360
Query: 361 FLQTWRASIIPLLAVPVSVIGTFAVLHVLGFSINALSLFGLVLAIGIVVDDAIVVVENVE 420
FLQTWRASIIPL+AVPVSV+GTF++L++LGFS+N LSLFGLVLAIGIVVDDAIVVVENVE
Sbjct: 361 FLQTWRASIIPLIAVPVSVVGTFSILYLLGFSLNTLSLFGLVLAIGIVVDDAIVVVENVE 420
Query: 421 RNIEAGLTPREATYRAMREVSGPIIAIALVLVAVFVPLAFISGLTGQFYRQFAVTIAIST 480
RNIE GL+P +A ++AMREVSGPIIAIALVL AVFVP+AF+SG+TGQFY+QFAVTIAIST
Sbjct: 421 RNIEEGLSPLQAAHQAMREVSGPIIAIALVLCAVFVPMAFLSGVTGQFYKQFAVTIAIST 480
Query: 481 VISAINSLTLSPALAALLLRGHDQPKDALTRGMDRAFGWLFRGFNKLFHRGSEAYSGGVK 540
VISAINSLTLSPALAALLL+ H PKD TR +DR FGWLFR FN+ FHR S Y G V
Sbjct: 481 VISAINSLTLSPALAALLLKPHGAPKDFPTRLIDRLFGWLFRPFNRFFHRSSNGYQGLVG 540
Query: 541 NVISRKALMLAIYVALIAVTFGLFKAVPGGFVPAQDKQYLIGFAQLPDGATLDRTDEVIQ 600
+ R+ + +YV L+ +FKAVPGGF+P QDK YLIG ++P+G++L RTD VI+
Sbjct: 541 KTLGRRGAVFVVYVLLLCAAGVMFKAVPGGFIPTQDKLYLIGGVKMPEGSSLARTDAVIR 600
Query: 601 RMGEIMKKNPNVEDAIAFPGLSINGFTNSSNSGIVFATLKPFDQRKRPDQSGGAVAGQLN 660
+M EI V+ A+AFPGL+ FTN+ N+G VF LKPFDQRK + + ++N
Sbjct: 601 KMSEIGMNTEGVDYAVAFPGLNALQFTNTPNTGTVFFGLKPFDQRK---HTAAEINAEIN 657
Query: 661 GAFAGIQDAFIVMFPPPPVAGLGTTGGFKLQLEDRASVGYDQMDAAVKAFMAKAQQAPEL 720
A IQ F PPP+ GLG G+ L ++DR +GY + AV Q P +
Sbjct: 658 AKIAQIQQGFGFSILPPPILGLGQGSGYSLYIQDRGGLGYGALQNAVNTMSGAIMQTPGM 717
Query: 721 AGMFTSWQVNVPQLYADIDRTKARQLGVPVTDIFDTMQIYLGSLYANDFNKFGRTYSVRV 780
+++Q NVPQL +DR KA+ GV +TD+F T+Q YLGS Y NDFN+FGRT+ V
Sbjct: 718 HFPISTYQANVPQLDVQVDRDKAKAQGVSLTDLFGTLQTYLGSSYVNDFNQFGRTWRVMA 777
Query: 781 QADAPYRARAEDVGLLKVRSTSGEMVPLSALMKVNSTFGPERAMRYNGYLAADINGGPAP 840
QAD P+R ED+ L+ R+ GEMVP+ +++ +++T+GP+ +RYNGY AAD+ G P
Sbjct: 778 QADGPFRDSVEDIANLRTRNNQGEMVPIGSMVNISTTYGPDPVIRYNGYPAADLIGDADP 837
Query: 841 G-YSSGQAQDAITKIAAETLPKGVSFEWTELTYQEILAGNSAFLVFPLAILLVFLVLAAQ 899
SS QA + ++ + LP G++ EWT+L++Q+ GN+A +VFP+A+LL FLVLAA
Sbjct: 838 RILSSAQAMTQLDGMSKQILPNGMNIEWTDLSFQQATQGNTALIVFPVAVLLAFLVLAAL 897
Query: 900 YESLTLPIAIILIVPMGIMAAMAGVWISGGDNNVFTQIGLIVLVGLSAKNAILIVEFARE 959
YES TLP+A+ILIVPM +++A+ GVW++GGDNNVF Q+GL+VL+GL+ KNAILIVEFARE
Sbjct: 898 YESWTLPLAVILIVPMTMLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE 957
Query: 960 LEFAGRTPVQAAIEASRLRLRPILMTSLAFVMGVLPLVLSTGAGSEMRKAMGVAVFAGMI 1019
LE G+ ++AA+EA RLRLRPI+MTS+AF+ G +PL+L GAG+E+R G+ VF+GM+
Sbjct: 958 LELQGKGIMEAALEACRLRLRPIVMTSIAFIAGTIPLILGHGAGAEVRGVTGITVFSGML 1017
Query: 1020 GVTAFGLFLTPVFYVLLRR 1038
GVT FGLFLTPVFYV LR+
Sbjct: 1018 GVTLFGLFLTPVFYVTLRK 1036
Score = 59.3 bits (142), Expect = 1e-12
Identities = 106/491 (21%), Positives = 186/491 (37%), Gaps = 42/491 (8%)
Query: 580 LIGFAQLPDGATLDRTDEVIQRMGEIMKKNPNV-EDAIAFP-GLSINGFTNS------SN 631
LI LP D +Q E NP V + +A P +ING N +
Sbjct: 26 LIAIPLLPVSEYPDVVPPSVQVRAEYPGANPKVIAETVATPLEEAINGVENMMYMKSVAG 85
Query: 632 SGIVFATLKPFDQRKRPDQSGGAVAGQLNGAFAGIQDAFIVMFPPPPVAGLGTTGGFK-- 689
S V T F PDQ+ V +++ A A + P V LG T +
Sbjct: 86 SDGVLVTTVTFRPGTDPDQAQVQVQNRVSQAEARL---------PEDVRRLGITTQKQSP 136
Query: 690 -LQLEDRASVGYDQMDAAVKAFMAKAQQAPELAGMFTSWQVNV-------PQLYADIDRT 741
L L + D+ A + ELA + Q+ + +++ D D+
Sbjct: 137 TLTLVVHLFSPGGKYDSLYMRNYATLKVKDELARLPGVGQIQIFGSGEYAMRIWLDPDKV 196
Query: 742 KARQLGVPVTDIFDTMQ-----IYLGSLYANDFNKFGRTYSVRVQADAPYRARAEDVGLL 796
AR G+ +D+ MQ + G L A K + + + A E ++
Sbjct: 197 AAR--GLTASDVVTAMQEQNVQVSAGQLGAEPLPKES-DFLISINAQGRLHTEEEFGNII 253
Query: 797 KVRSTSGEMVPLSALMKVNSTFGPERAMR--YNGYLAADINGGPAPGYSSGQAQDAITKI 854
+ G +V L + ++ G A+R N A I +PG ++ +A+
Sbjct: 254 LKTAQDGSLVRLRDVARIEMGSG-SYALRSQLNNKDAVGIGIFQSPGANAIDLSNAVRAK 312
Query: 855 AAETLPK-GVSFEWTELTYQEILAGNSAFLVFPL---AILLVFLVLAAQYESLTLPIAII 910
E + +W + +S V A++LV LV+ ++ I +
Sbjct: 313 MNELATRFPEDMKWAAPYDPTVFVRDSIRAVVQTLLEAVVLVVLVVILFLQTWRASIIPL 372
Query: 911 LIVPMGIMAAMAGVWISGGDNNVFTQIGLIVLVGLSAKNAILIVEFARELEFAGRTPVQA 970
+ VP+ ++ + +++ G N + GL++ +G+ +AI++VE G +P+QA
Sbjct: 373 IAVPVSVVGTFSILYLLGFSLNTLSLFGLVLAIGIVVDDAIVVVENVERNIEEGLSPLQA 432
Query: 971 AIEASRLRLRPILMTSLAFVMGVLPLVLSTGAGSEMRKAMGVAVFAGMIGVTAFGLFLTP 1030
A +A R PI+ +L +P+ +G + K V + + L L+P
Sbjct: 433 AHQAMREVSGPIIAIALVLCAVFVPMAFLSGVTGQFYKQFAVTIAISTVISAINSLTLSP 492
Query: 1031 VFYVLLRRLAG 1041
LL + G
Sbjct: 493 ALAALLLKPHG 503