Pairwise Alignments

Query, 1089 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

Subject, 1048 a.a., Multidrug efflux pump subunit AcrB from Enterobacter sp. TBS_079

 Score =  813 bits (2100), Expect = 0.0
 Identities = 426/1046 (40%), Positives = 662/1046 (63%), Gaps = 26/1046 (2%)

Query: 3    LSKFFIDRPIFAGVLSLLMLIAGLIALRGLPISEYPEVAPPSVVVRAQYPGANPKVIAET 62
            +  FFIDRPIFA V+++++++AG +A+  LP+++YP +APP+V + A YPGA+ K + +T
Sbjct: 1    MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISATYPGADAKTVQDT 60

Query: 63   VATPLEEQINGVEGMLYMGSQATTDGVLTLTVTFRLGTDPDKAQQLVQNRVSQAEPRLPE 122
            V   +E+ +NG++ ++YM S + + G + +T+TF+ GTD D AQ  VQN++  A P LP+
Sbjct: 61   VTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFQSGTDADIAQVQVQNKLQLAMPLLPQ 120

Query: 123  EVRRLGITTVKSAPDLTMVVHLVSPNNRYDINYLRNYAVLNVKDPLARIEGVGQVQIFGG 182
            EV++ G++  KS+    MVV +++ N       + +Y   N+KD ++R  GVG VQ+FG 
Sbjct: 121  EVQQQGVSVEKSSSSFLMVVGVINTNGTMTQEDISDYVGANMKDAISRTSGVGDVQLFGS 180

Query: 183  GDYSMRVWLDPQKVAQRGLSASDVVAAIRGQNVQAAAGVVGASPGLSGVDMQLSINAQGR 242
              Y+MR+W+DP K+    L+  DV+ AI+ QN Q AAG +G +P + G  +  SI AQ R
Sbjct: 181  -QYAMRIWMDPNKLNNFQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQTR 239

Query: 243  LQSEEEFGDIIVKSGTDGAVTRLRDIGRLEMGAADYSLRSLLNNDPAVGMGVFQAPGSNA 302
            L S +EF  I++K   DG+  RLRD+ ++E+G  +Y + +  N  PA G+G+  A G+NA
Sbjct: 240  LTSADEFSKILLKVNQDGSQVRLRDVAKVELGGENYDIIAKFNGKPASGLGIKLATGANA 299

Query: 303  LDISANVRKTMEELNKNMPEGLEYRIAYDPTQFVRASIESVIHTLLEAIMLVVLVVILFL 362
            LD +  +R  ++++    P GL+    YD T FV+ SI  V+ TL EAI+LV LV+ LFL
Sbjct: 300  LDTATAIRAELKKMEPFFPSGLKIVYPYDTTPFVKISIHEVVKTLAEAIILVFLVMYLFL 359

Query: 363  QTWRASIIPLLAVPVSVIGTFAVLHVLGFSINALSLFGLVLAIGIVVDDAIVVVENVERN 422
            Q +RA++IP +AVPV ++GTFA+L + G+SIN L++FG+VLAIG++VDDAIVVVENVER 
Sbjct: 360  QNFRATLIPTIAVPVVLLGTFAILAIFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERV 419

Query: 423  I-EAGLTPREATYRAMREVSGPIIAIALVLVAVFVPLAFISGLTGQFYRQFAVTIAISTV 481
            + E GL P+EAT ++M ++ G ++ IA+VL AVF+P+AF  G TG  YRQF++TI  +  
Sbjct: 420  MAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMA 479

Query: 482  ISAINSLTLSPALAALLLR-----GHDQPKDALTRGMDRAFGWLFRGFNKLFHRGSEAYS 536
            +S + +L L+PAL A +L+     GH + K          FGW    FN++F + +  Y+
Sbjct: 480  LSVLVALILTPALCATMLKPVQKGGHGEHKG--------FFGW----FNRMFDKSTHHYT 527

Query: 537  GGVKNVISRKALMLAIYVALIAVTFGLFKAVPGGFVPAQDKQYLIGFAQLPDGATLDRTD 596
              V N++      L +Y+ ++     LF  +P  F+P +D+   +  AQLP GA+ +RT 
Sbjct: 528  DSVGNILRSTGRYLLLYIIIVVGMAYLFVRLPSSFLPDEDQGVFLTMAQLPAGASQERTQ 587

Query: 597  EVIQRMGE--IMKKNPNVEDAIAFPGLSINGFTNSSNSGIVFATLKPFDQRKRPDQSGGA 654
            +V+  + +  + K+  NVE   A  G    G     N+GI F +LK + +R   +    A
Sbjct: 588  KVLDEVTDYYLTKEKANVESVFAVNGFGFAG--RGQNTGIAFVSLKDWSERPGEENKVEA 645

Query: 655  VAGQLNGAFAGIQDAFIVMFPPPPVAGLGTTGGFKLQLEDRASVGYDQMDAAVKAFMAKA 714
            + G+  G F+ I+DA +  F  P +  LGT  GF  QL D+  +G++++  A      + 
Sbjct: 646  ITGRAMGTFSQIKDAMVFAFNLPAIVELGTATGFDFQLIDQGGLGHEKLTQARNQLFGEV 705

Query: 715  QQAPE-LAGMFTSWQVNVPQLYADIDRTKARQLGVPVTDIFDTMQIYLGSLYANDFNKFG 773
             + P+ L G+  +   + PQ   DID+ KA+ LGV ++DI  T+    G  Y NDF   G
Sbjct: 706  AKHPDLLVGVRPNGLEDTPQYKIDIDQEKAQALGVSISDINTTLGAAWGGSYVNDFIDRG 765

Query: 774  RTYSVRVQADAPYRARAEDVGLLKVRSTSGEMVPLSALMKVNSTFGPERAMRYNGYLAAD 833
            R   V V ++A YR    D+    VR  +G+MVP S+    +  +G  R  RYNG  + +
Sbjct: 766  RVKKVYVMSEAQYRMLPNDINNWYVRGNNGQMVPFSSFSTSHWEYGSPRLERYNGLPSME 825

Query: 834  INGGPAPGYSSGQAQDAITKIAAETLPKGVSFEWTELTYQEILAGNSAFLVFPLAILLVF 893
            I G  APG S+G+A + + ++A + LP G+ ++WT ++YQE L+GN A  ++ +++++VF
Sbjct: 826  ILGQAAPGRSTGEAMNLMEELAGK-LPAGIGYDWTGMSYQERLSGNQAPALYAISLIVVF 884

Query: 894  LVLAAQYESLTLPIAIILIVPMGIMAAMAGVWISGGDNNVFTQIGLIVLVGLSAKNAILI 953
            L LAA YES ++P +++L+VP+G++ A+      G  N+V+ Q+GL+  +GLSAKNAILI
Sbjct: 885  LCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILI 944

Query: 954  VEFAREL-EFAGRTPVQAAIEASRLRLRPILMTSLAFVMGVLPLVLSTGAGSEMRKAMGV 1012
            VEFA++L E  G+  ++A ++A R+RLRPILMTSLAF++GV+PLV+STGAGS  + A+G 
Sbjct: 945  VEFAKDLMEKEGKGLIEATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGT 1004

Query: 1013 AVFAGMIGVTAFGLFLTPVFYVLLRR 1038
             V  GM+  T   +F  PVF+V++RR
Sbjct: 1005 GVMGGMVTATVLAIFFVPVFFVVVRR 1030