Pairwise Alignments

Query, 1089 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

Subject, 1044 a.a., hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) from Shewanella sp. ANA-3

 Score =  828 bits (2140), Expect = 0.0
 Identities = 443/1051 (42%), Positives = 659/1051 (62%), Gaps = 12/1051 (1%)

Query: 3    LSKFFIDRPIFAGVLSLLMLIAGLIALRGLPISEYPEVAPPSVVVRAQYPGANPKVIAET 62
            +++FFIDRPIFA V++L++++AG++++R LP+S+YP +APP+VV+ A YPGA+ K++ ++
Sbjct: 1    MARFFIDRPIFAWVIALIIMLAGVLSIRSLPVSQYPSIAPPTVVISANYPGASAKIVEDS 60

Query: 63   VATPLEEQINGVEGMLYMGSQATTDGVLTLTVTFRLGTDPDKAQQLVQNRVSQAEPRLPE 122
            V   +E+++ G++ + Y+ S + + G  ++T+TF    DPD AQ  VQN++  A   LP+
Sbjct: 61   VTQVIEQRMKGIDHLRYIASTSDSFGNASITLTFNAEADPDIAQVQVQNKLQGAMTLLPQ 120

Query: 123  EVRRLGITTVKSAPDLTMVVHLVSPNNRYDINYLRNYAVLNVKDPLARIEGVGQVQIFGG 182
            EV+  G+   KS+    MV+  VS +   D   + +Y   N++DP++R+ GVG++QIFG 
Sbjct: 121  EVQSQGVNVNKSSSGFLMVLGFVSTDGSLDKGDIADYVGANIQDPMSRVPGVGEIQIFGA 180

Query: 183  GDYSMRVWLDPQKVAQRGLSASDVVAAIRGQNVQAAAGVVGASPGLSGVDMQLSINAQGR 242
              Y+MR+WLDP K+ Q  L++ DVV+AIR QN Q +AG +G +P L G ++  +++AQ R
Sbjct: 181  -QYAMRIWLDPLKLTQYNLTSLDVVSAIRAQNAQVSAGQLGGTPSLPGQELNATVSAQSR 239

Query: 243  LQSEEEFGDIIVKSGTDGAVTRLRDIGRLEMGAADYSLRSLLNNDPAVGMGVFQAPGSNA 302
            LQ+ E+F  II+KS T GA   L D+ R+E+G+  Y++ SL N  PA G+ +  A G+NA
Sbjct: 240  LQTPEQFRKIIIKSDTSGANVFLGDVARVELGSESYAVESLYNGKPASGIAIKLATGANA 299

Query: 303  LDISANVRKTMEELNKNMPEGLEYRIAYDPTQFVRASIESVIHTLLEAIMLVVLVVILFL 362
            LD +  VR  +EEL    P GL+    YD T FV  SIE V+HTLLEAI+LV +++ LFL
Sbjct: 300  LDTAEAVRAKVEELRPFFPAGLDVVYPYDTTPFVEKSIEGVVHTLLEAIVLVFVIMYLFL 359

Query: 363  QTWRASIIPLLAVPVSVIGTFAVLHVLGFSINALSLFGLVLAIGIVVDDAIVVVENVERN 422
            Q +RA++IP +AVPV ++GTFA+L   GFSIN L++F +VLAIG++VDDAIVVVENVER 
Sbjct: 360  QNFRATLIPTIAVPVVLLGTFAILSATGFSINTLTMFAMVLAIGLLVDDAIVVVENVERV 419

Query: 423  I-EAGLTPREATYRAMREVSGPIIAIALVLVAVFVPLAFISGLTGQFYRQFAVTIAISTV 481
            + E GL+P EAT ++M +++G ++ I L L AVFVP+AF+SG TG  YRQF++TI  +  
Sbjct: 420  MAEEGLSPLEATRKSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMA 479

Query: 482  ISAINSLTLSPALAALLLRGHDQPKDALTRGMDRAFGWLFRGFNKLFHRGSEAYSGGVKN 541
            +S + +L L+PAL A +L+   +    +  G    FGW  RGF++L +R    Y   V  
Sbjct: 480  LSVLVALILTPALCATMLKPLKKGHGHIETGF---FGWFNRGFDRLTNR----YESSVAG 532

Query: 542  VISRKALMLAIYVALIAVTFGLFKAVPGGFVPAQDKQYLIGFAQLPDGATLDRTDEVIQR 601
            +I R   ++ IY AL+     +F  +P  F+P +D+  L   A LP  +T + T +V+++
Sbjct: 533  IIKRSFRVMMIYAALVVAVGWIFMRMPTAFLPDEDQGILFTQAILPTNSTQESTLKVLEK 592

Query: 602  MGEIMKKNPNVEDAIAFPGLSINGFTNSSNSGIVFATLKPFDQRKRPDQSGGAVAGQLNG 661
            + +       V    +  G S  G     N GI F  LK + +R+ P     ++AG+  G
Sbjct: 593  VSDHYLAEEGVRSVFSVAGFSFAG--QGQNMGIAFVGLKDWSEREAPGMDVQSIAGRAMG 650

Query: 662  AFAGIQDAFIVMFPPPPVAGLGTTGGFKLQLEDRASVGYDQMDAAVKAFMAKAQQAPELA 721
             F+ +++AF+  F PP V  LGT  GF + L+D+   G+D++ AA    +  A Q P L 
Sbjct: 651  VFSQMKEAFVFAFVPPAVIELGTANGFDMYLQDKNGQGHDKLVAARNQLLGMAAQNPNLV 710

Query: 722  GMFTSWQVNVPQLYADIDRTKARQLGVPVTDIFDTMQIYLGSLYANDFNKFGRTYSVRVQ 781
            G+  + Q + P     ID  K   LG+ + ++   +    G  Y NDF   GR   V VQ
Sbjct: 711  GVRPNGQEDAPIYQLHIDHAKLSALGIEIANVNSVLATAWGGSYVNDFIDRGRVKKVYVQ 770

Query: 782  ADAPYRARAEDVGLLKVRSTSGEMVPLSALMKVNSTFGPERAMRYNGYLAADINGGPAPG 841
             DA YR + ED+    VR+  G+MVP SA       +G  R  R+NG  A +I G  APG
Sbjct: 771  GDAQYRMQPEDLDTWYVRNNKGDMVPFSAFATGAWEYGSPRLERFNGLPAMNIQGATAPG 830

Query: 842  YSSGQAQDAITKIAAETLPKGVSFEWTELTYQEILAGNSAFLVFPLAILLVFLVLAAQYE 901
            +S+G A + I +   + LP G   EW  L+Y+E L+GN A  ++ L+IL+VFLVLAA YE
Sbjct: 831  FSTGAAMN-IMEDMVKQLPPGFGIEWNGLSYEERLSGNQAPALYALSILVVFLVLAALYE 889

Query: 902  SLTLPIAIILIVPMGIMAAMAGVWISGGDNNVFTQIGLIVLVGLSAKNAILIVEFARELE 961
            S ++P A+IL+VP+GI+ A+  +   G  N+VF Q+GL+  VGL+ KNAILIVEFA+E  
Sbjct: 890  SWSVPFAVILVVPLGIIGALLAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEFY 949

Query: 962  FAGRTPVQAAIEASRLRLRPILMTSLAFVMGVLPLVLSTGAGSEMRKAMGVAVFAGMIGV 1021
              G   ++A + A R+RLRPILMTSLAF +GV+PL +STG GS  + A+G  V  GM+  
Sbjct: 950  EKGAGLIEATLHAVRVRLRPILMTSLAFGLGVVPLAISTGVGSGSQNAIGTGVLGGMMSS 1009

Query: 1022 TAFGLFLTPVFYVLLRRLAGNRPLKLHGEVP 1052
            T  G+F  P+F+V++ R+   R  K   E P
Sbjct: 1010 TFLGIFFVPLFFVIVERIFSKREKKGKEEKP 1040