Pairwise Alignments

Query, 420 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 400 a.a., Bcr/CflA family drug resistance efflux transporter from Vibrio cholerae E7946 ATCC 55056

 Score = 66.6 bits (161), Expect = 1e-15
 Identities = 98/354 (27%), Positives = 152/354 (42%), Gaps = 44/354 (12%)

Query: 68  LGQLPAGVMLDRLGVRTVSLSLFAMTALGCVAAALAQGPVGFFAAQALLGLGCCGMLLCP 127
           +GQL AG + D+ G RTV+L   ++ AL  + A  AQ       A+ L GLG C   +  
Sbjct: 62  VGQLFAGPLADKYGRRTVALGGISIYALSALLAWSAQSIEWMLMARLLQGLGACATSVAA 121

Query: 128 FALAARALPPARFAMWSGLILSIGNCGM----LLSATPMAWLIERHGWRASFWLAGAMAI 183
           FA       P R    SG ++S  N  +     L+    +WL ++ GWRA+F      A+
Sbjct: 122 FATVRDLFGPQR----SGKMISYLNGAICFIPALAPILGSWLTQQFGWRANFSFMTGFAL 177

Query: 184 GIGVLVALAVPR-HPRTAPAPARRLKTELREVL-----ALTASLPLRG-PVVLAFTSLAA 236
            +G+ +AL +   +P     PA    +    VL        ASL L    V+LA+ + A 
Sbjct: 178 LVGLAMALRLQESNPYMGSRPAVFKLSRYAAVLKAPTFLFHASLCLLAMAVILAYVTSAP 237

Query: 237 VLAVRGVWGGPWFMDVKGLTRIEAGNALIPLTLAVAIGPLVAGALDRLTGARRALLAG-S 295
           V+ +  +      + +   T     NA+I + +A    P V   +D+L G R +L+ G +
Sbjct: 238 VILMERLQ-----LSMNEFTFWFGVNAVINI-IACMTAPKV---MDKL-GTRWSLIIGIT 287

Query: 296 HLAAAGLLLVVVAAAPLGRESAHGVLGSASFDAWVFFVFGCCMSTQPLLFAMGQSATA-- 353
            L  AG L++V+                AS  A++  VF   +    +L A    A A  
Sbjct: 288 TLMIAGSLMLVLR-------------NQASALAFMLPVFLSSIGFAWILGAAAGKALAPF 334

Query: 354 RESAGKALAALNLMFFCGTAFHQLASGAIASAFGLAPVFVYFAVFLAVSALLFL 407
            + AG A A L L    G+    L  G +        + +   ++LA  ALL L
Sbjct: 335 GDKAGTAAALLGLFQMSGSG---LLVGTLQRIMPEPQLLIGLTMWLAAPALLIL 385