Pairwise Alignments

Query, 314 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 326 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  201 bits (511), Expect = 2e-56
 Identities = 117/316 (37%), Positives = 173/316 (54%), Gaps = 8/316 (2%)

Query: 4   FVVRRLLAAAPTLFISGAAVFFLIRLIPGDPAALLLGDQA--DAASLADLHRRLGLDQGL 61
           F +RRL  + P+L I    VF L++L PGD    LL      DA  +  L    GLD  +
Sbjct: 6   FALRRLATSIPSLLIILVGVFLLLQLAPGDTVDALLAQMGGGDAQIIETLRHFYGLDAPV 65

Query: 62  PTQFSLWFQRMLHGDLGQSIRTGEPVLSLVIDHFVVSARIVFVAVALAAAIAVPAGMLAA 121
             Q   +  R++  DLG S   G+PV+ ++++   V+  ++  ++ +A +  V  G+LAA
Sbjct: 66  AVQLGRYLLRLVQFDLGYSAIYGKPVIDVIVERLPVTLLLMGASLVVAVSGGVALGVLAA 125

Query: 122 WRQNGKLDIGLVSAATVLLSIPSFWLGLMLLYLFGLELGWLPVIGYVDFSED------PV 175
            R N   D  + +   V  + PSFWLGLM + +F ++LGWLP  G+ +           +
Sbjct: 126 RRVNKWPDTLISTLGLVFYATPSFWLGLMAVVVFAVKLGWLPPGGFEEVGAGYQGLTRAL 185

Query: 176 AALTYMVLPVATLVLHETGILIRMARASTLEVLRLDYITYARSKGLSEGAVLWRHAFRNA 235
               +M LP  TL L      +R+ RAS LEV  LD++  AR+KG+ E  ++  H  RNA
Sbjct: 186 DIARHMALPTITLSLIFLATYLRIMRASMLEVSSLDFVRTARAKGVDETKIVTHHVLRNA 245

Query: 236 FGPTWTLIGLVLGNLLGGIAVVETVFTIPGLGRLLVDSIFGRDYPVIQGCLLFVAFVYVL 295
             P  TLIGL    +LGG  VVE+VFT+PGLGRL  +S+  RD   + G +L  A + ++
Sbjct: 246 LLPMLTLIGLNASTMLGGSVVVESVFTLPGLGRLAYESVVQRDLNTLLGIVLLSAVLVIV 305

Query: 296 INLVVDLLYPLFDPRV 311
           +N +VDLLY   DPR+
Sbjct: 306 VNFIVDLLYARLDPRI 321