Pairwise Alignments

Query, 540 a.a., ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  379 bits (973), Expect = e-109
 Identities = 218/564 (38%), Positives = 329/564 (58%), Gaps = 39/564 (6%)

Query: 8   SLLQVSGLTLALADGK---ALVHGISFDIAPGEMIGIVGESGSGKTLAARSLIGLAPPAV 64
           SLL+V  L +         A V  ++ DI  GE++G+VGESG+GK+    ++I L  P  
Sbjct: 2   SLLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPG 61

Query: 65  HRTAGSIVFDGQEVTALSAGALRKLRGSRIGMVFQEPMTSLNPSMAIGRQLDEGLALHTT 124
               G +  +G++++ LS  A+R++RGS+IG +FQ+PMTSLNP   +  QL E +  +  
Sbjct: 62  TIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQ 121

Query: 125 LSPAQRRARILEMLERVRIQDPAAALSAYPHRFSGGMRQRIMLASAMLLRPSLLIADEPT 184
           +S  +   R L ++++V I  P   L  YPH+FSGGMRQR+++A A+   P L+IADEPT
Sbjct: 122 VSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPT 181

Query: 185 TALDAVVQREVMDLMVELTRDHGTAVLMISHDLPMVARYTDRMVVMHHGRIVESNRTAAL 244
           TALD  +Q ++++L+ EL + +    ++++HD+ +V+  TDR+ VM+ G +VE   TA +
Sbjct: 182 TALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKV 241

Query: 245 VSAPREDYTRKLLAAMPT------RGPVREIPQAA------------------------P 274
           +  P   YTR L++A+P       R P+    + A                        P
Sbjct: 242 LGTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKYTGP 301

Query: 275 ILEVDGLVLDFPAGGGLL-SKRPPKRALKGIDLRIAPGEVVALVGGSGSGKTTLGRAIAG 333
           +L+V+ + L F     L  S+R   +A   +   +  GE   LVG SGSGK+T+ R IAG
Sbjct: 302 LLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAG 361

Query: 334 LLQPSGGRILFEGKGI-ARRSEGWAR-YRAQCQMVFQDPASSLDPRMTVGASIGEALTGM 391
           L QP+ GR+ FEG  + A +SE   R  R Q QMVFQ+P +S++PRM +   I E +   
Sbjct: 362 LYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIR-F 420

Query: 392 PGLTPAARRGR--ILEVLQEVSLPAEVASRYPHELSGGQRQRVAIARAVVRRPAFIVADE 449
             LT +    R  + ++L+ V L      +YPHE SGGQRQR++IARA+  RP  ++ DE
Sbjct: 421 HKLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLICDE 480

Query: 450 PVSALDVTVRAQILELFAQLQSRHGFSCLFISHDLAVVEQIADRVIVMRHGEIVEQGPRD 509
           P SALDV+V+AQIL L   LQ     + LFISHDL V+ Q+ DRV VM+ G ++E  P +
Sbjct: 481 PTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTE 540

Query: 510 EVFDRPHHDYTRELLAAAPRMGGL 533
           ++F  P H+Y+++L++  P   GL
Sbjct: 541 QLFTDPQHEYSKKLISLMPEFTGL 564



 Score =  172 bits (435), Expect = 4e-47
 Identities = 100/248 (40%), Positives = 148/248 (59%), Gaps = 7/248 (2%)

Query: 27  HGISFDIAPGEMIGIVGESGSGKTLAARSLIGLAPPAVHRTAGSIVFDGQEVTALSAGAL 86
           + +SF +  GE  G+VGESGSGK+  AR + GL  P     AG + F+G ++TAL +   
Sbjct: 330 NNVSFAVHEGETFGLVGESGSGKSTIARVIAGLYQP----NAGRVTFEGIDLTALKSEHE 385

Query: 87  RKLRGSRIGMVFQEPMTSLNPSMAIGRQLDEGLALHT-TLSPAQRRARILEMLERVRIQD 145
           R+    ++ MVFQ P TS+NP M I   + E +  H  T S ++ R  + ++LE V +  
Sbjct: 386 RRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRFHKLTRSESETRQIVNDLLEHVGLGK 445

Query: 146 PAAALSAYPHRFSGGMRQRIMLASAMLLRPSLLIADEPTTALDAVVQREVMDLMVELTRD 205
            A     YPH FSGG RQRI +A A+  RP LLI DEPT+ALD  VQ ++++L+ +L  +
Sbjct: 446 MAGL--KYPHEFSGGQRQRISIARALATRPRLLICDEPTSALDVSVQAQILNLLKDLQDE 503

Query: 206 HGTAVLMISHDLPMVARYTDRMVVMHHGRIVESNRTAALVSAPREDYTRKLLAAMPTRGP 265
               +L ISHDLP++ +  DR+ VM  G ++E   T  L + P+ +Y++KL++ MP    
Sbjct: 504 LNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQLFTDPQHEYSKKLISLMPEFTG 563

Query: 266 VREIPQAA 273
           +RE   AA
Sbjct: 564 LRESTTAA 571