Pairwise Alignments

Query, 540 a.a., ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 556 a.a., ABC transporter for D-Raffinose, ATPase component (from data) from Sinorhizobium meliloti 1021

 Score =  404 bits (1039), Expect = e-117
 Identities = 233/510 (45%), Positives = 319/510 (62%), Gaps = 11/510 (2%)

Query: 26  VHGISFDIAPGEMIGIVGESGSGKTLAARSLIGL-APPAVHRTAGSIVFDGQEVTALSAG 84
           V  +SF +  GE + IVGESGSGK++ AR+++GL +  A       I +DG++V   S  
Sbjct: 45  VKDVSFQLYRGETVAIVGESGSGKSVTARTVMGLLSKRATIAPQARIEYDGRDVLKFSKR 104

Query: 85  ALRKLRGSRIGMVFQEPMTSLNPSMAIGRQLDEGLALHTTLSPAQRRARILEMLERVRIQ 144
             R LRG RI M+FQEPM+SLNP   IG Q+ E +  H  +S      R LE+L  V+I 
Sbjct: 105 ERRALRGDRISMIFQEPMSSLNPVYTIGSQIIEAIRAHRRVSRRAAAERALELLRHVQIP 164

Query: 145 DPAAALSAYPHRFSGGMRQRIMLASAMLLRPSLLIADEPTTALDAVVQREVMDLMVELTR 204
           DP A L+ YPH+ SGG RQR+M+A A+   P +LIADEPTTALD  VQ ++++L+ +L +
Sbjct: 165 DPEARLNQYPHQLSGGQRQRVMIAMALANDPDVLIADEPTTALDVTVQAQILNLIRKLQQ 224

Query: 205 DHGTAVLMISHDLPMVARYTDRMVVMHHGRIVESNRTAALVSAPREDYTRKLLAAMPTRG 264
           + G AV++I+HDL +V +++D + VM  G + E N T AL + P+  YTR+LL++ P+ G
Sbjct: 225 ELGMAVILITHDLTVVRQFSDYVYVMQLGEVKEHNTTEALFADPQHAYTRRLLSSEPS-G 283

Query: 265 PVREIPQAAPILEVDG----LVLDFPAGGGLLSKRPPKRALKGIDLRIAPGEVVALVGGS 320
               +P  APIL +DG    +      GG    +     A+ G+ L +   E + LVG S
Sbjct: 284 SANPLPDDAPIL-LDGRNVRVSFTLKKGGFFRPEFKELVAVDGLSLNLRRHETLGLVGES 342

Query: 321 GSGKTTLGRAIAGLLQPSGGRILFEGKGIARRS-EGWARYRAQCQMVFQDPASSLDPRMT 379
           GSGKTT G+A+  LL   GG I FEG+ I  +  +G    R++ Q+VFQDP SSL+PRM+
Sbjct: 343 GSGKTTFGQALIRLLNTDGGEIYFEGEPIHDKDRKGMRPLRSKIQIVFQDPFSSLNPRMS 402

Query: 380 VGASIGEAL--TGMPGLTPAARRGRILEVLQEVSLPAEVASRYPHELSGGQRQRVAIARA 437
           VG  I E L   GM G     R  R+ + L    +P+ + SR+PHE SGGQRQR+AIARA
Sbjct: 403 VGQIIEEGLIVNGM-GENRKDRLKRVEDALVSAGMPSNILSRFPHEFSGGQRQRIAIARA 461

Query: 438 VVRRPAFIVADEPVSALDVTVRAQILELFAQLQSRHGFSCLFISHDLAVVEQIADRVIVM 497
           V   P FI+ DEP SALD++V+AQI+EL  +LQ   G S L ISHDL VV  +  RV+VM
Sbjct: 462 VALEPEFILLDEPTSALDLSVQAQIIELLRRLQDERGLSYLVISHDLKVVRALCHRVVVM 521

Query: 498 RHGEIVEQGPRDEVFDRPHHDYTRELLAAA 527
           + G+IVE+GP  EV + P   YT  L+ AA
Sbjct: 522 QDGKIVEEGPVSEVLNNPKTAYTERLVKAA 551



 Score =  179 bits (453), Expect = 3e-49
 Identities = 105/271 (38%), Positives = 157/271 (57%), Gaps = 15/271 (5%)

Query: 267 REIPQAAPILEVDGLVLDFPAGGGLLSKRPPKRALKGIDLRIAPGEVVALVGGSGSGKTT 326
           R++    P+++   + + F    G +      +A+K +  ++  GE VA+VG SGSGK+ 
Sbjct: 17  RDMKDERPVIDARKVAVSFKVENGTV------QAVKDVSFQLYRGETVAIVGESGSGKSV 70

Query: 327 LGRAIAGLLQPSG-----GRILFEGKGIARRS--EGWARYRAQCQMVFQDPASSLDPRMT 379
             R + GLL          RI ++G+ + + S  E  A    +  M+FQ+P SSL+P  T
Sbjct: 71  TARTVMGLLSKRATIAPQARIEYDGRDVLKFSKRERRALRGDRISMIFQEPMSSLNPVYT 130

Query: 380 VGASIGEALTGMPGLTPAARRGRILEVLQEVSLPAEVA--SRYPHELSGGQRQRVAIARA 437
           +G+ I EA+     ++  A   R LE+L+ V +P   A  ++YPH+LSGGQRQRV IA A
Sbjct: 131 IGSQIIEAIRAHRRVSRRAAAERALELLRHVQIPDPEARLNQYPHQLSGGQRQRVMIAMA 190

Query: 438 VVRRPAFIVADEPVSALDVTVRAQILELFAQLQSRHGFSCLFISHDLAVVEQIADRVIVM 497
           +   P  ++ADEP +ALDVTV+AQIL L  +LQ   G + + I+HDL VV Q +D V VM
Sbjct: 191 LANDPDVLIADEPTTALDVTVQAQILNLIRKLQQELGMAVILITHDLTVVRQFSDYVYVM 250

Query: 498 RHGEIVEQGPRDEVFDRPHHDYTRELLAAAP 528
           + GE+ E    + +F  P H YTR LL++ P
Sbjct: 251 QLGEVKEHNTTEALFADPQHAYTRRLLSSEP 281