Pairwise Alignments

Query, 1160 a.a., Transcription-repair coupling factor from Variovorax sp. SCN45

Subject, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

 Score = 1030 bits (2664), Expect = 0.0
 Identities = 550/1133 (48%), Positives = 738/1133 (65%), Gaps = 17/1133 (1%)

Query: 23   ALLLAQLAMREKAAGRATAMFTADANDAQRLIDEIAFFAPELRCALFPDWETLPYDSFSP 82
            AL +A+LA    A    T +   D   A +L+ E+  F+     ALFPDWETLPYD+FSP
Sbjct: 30   ALAIAELA---NAHTSHTLLAVPDPQTALKLLHEVEQFSHS-EVALFPDWETLPYDNFSP 85

Query: 83   HQDLISERLATLWRISQKEADVVLVPATTALYRLAPPAFLAGYTFHFKAKQKLEESKLKA 142
            HQD+IS+R++ L+++      + +VP +T L R +P  FL  +T   K        KL+ 
Sbjct: 86   HQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTLIVKRGDHFSLDKLRL 145

Query: 143  QLTLAGYSHVTQVVSPGEYAVRGGLIDLFPMGSPVPFRVDLFDDEIDSIRTFDPDTQRSL 202
            QL  + Y HV QV  PGEYA RG ++DLFPMGS  PFR+D FDDEID+IRTFDPD QRS+
Sbjct: 146  QLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTIRTFDPDNQRSI 205

Query: 203  YPVPEVRLLPGREFPMDEDARGRFRGRWRELLEGDPTKSRIYKDMGNGVATAGIEYYLPL 262
              + E+RLLP  EFP    A   FR RWR+  E       +Y  +  G   AGIEY+ PL
Sbjct: 206  AEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGTWPAGIEYWQPL 265

Query: 263  FFDETATVFDYLGPDATVVLHGDLEPAFQHFWQDTNERYRLVRGDPERPALPPEALFLNA 322
            FF+ + T+FDYL  ++ +++ G+LE A   F  D + RY     DP RP LPP  L+L  
Sbjct: 266  FFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQRNIDPLRPLLPPNELWLRK 325

Query: 323  EQFYQRAKPHAQLAIRG---DVPTEAPYAEFDRLPPFAVVRGAEDPLVGLKAHIAKTPHR 379
            ++ +   K   Q+ +     ++      A+   LP  AV    ++PL  L+    +   +
Sbjct: 326  DELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQNKEPLAALRQFSEQFTGK 385

Query: 380  VLLIAESDGRRESLLDFLRASGVNPPAFDSLAEFEASADEKVGIATAALASGFAWREQGI 439
            ++   ES+GRRE+LL+ L+   + P + +  +       EK  +   +   GF + +  +
Sbjct: 386  IIFSVESEGRREALLELLQRIKLRPQSQNDFS-LACQQTEKYSLVLGSAERGFIYGDNQV 444

Query: 440  DLVTETELFATAPTTRRRNKKQEQVSDVEALIKDLSELNVGDPVVHTAHGIGRYRGLIHM 499
             L+ E++L       RRR K ++ V++ +A+I++L+EL  G PVVH  HGIGRY GL  +
Sbjct: 445  ALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQPVVHIDHGIGRYLGLQTL 504

Query: 500  DLGQGTDAEGKPLLQEMLHLEYADKATLYVPVSQLHQISRYTGVSADEAPLHKLGSGQWE 559
            + G         ++ E + LEY ++A LYVPVS L+ ISRY+G + + A LHKLG   W 
Sbjct: 505  EAGG--------MVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLHKLGGEAWV 556

Query: 560  KAKRKAAEQVRDSAAELLNIYARRAAREGHAFRYSPADYEVFANDFGFQETADQKAAIHA 619
            KA+RKAAE+VRD AAELL++YA+R  + G  F      Y  F   F F+ET DQ  AI+A
Sbjct: 557  KARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMAINA 616

Query: 620  VVQDMISPQPMDRLVCGDVGFGKTEVALRAAFIAVTGGKQVAFLAPTTLLAEQHYQTLVD 679
            V+ DM   + MDRLVCGDVGFGKTEVA+RAAF+A   GKQVA L PTTLLA+QH++   D
Sbjct: 617  VLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRD 676

Query: 680  RFAKWPVKVAEMSRFRSAKEITAAAKGLAEGQVDIVVGTHKLLSQSVKFKNLGLLIIDEE 739
            RFA  P++V  +SRF+SAKE     + +A+G+VDI+VGTHKLLS  ++F +LGLLI+DEE
Sbjct: 677  RFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEE 736

Query: 740  HRFGVRHKEAMKAMRAEVDVLTLTATPIPRTLGMALEGLRDLSVIATAPQRRLAIKTFVR 799
            HRFGVR KE +KAMRA+VD+LTLTATPIPRTL MA+ G+RDLS+IAT P RRLAIKTFVR
Sbjct: 737  HRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVR 796

Query: 800  NEGTGVIREAVLRELKRGGQVYFLHNEVETIENRRQKLEEILPEARIAVAHGQMPERELE 859
                 VIREAVLRE+ RGGQVYFLHN+VETI+     LE+++PEARI VAHGQM ERELE
Sbjct: 797  QSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQMRERELE 856

Query: 860  RVMRDFVAQRYNLLLCSTIIETGIDVPTANTIVMSRADKFGLAQLHQLRGRVGRSHHQAY 919
            +VM DF  QR+NLL+C+TIIETGIDVPTANTI+M RAD  GLAQLHQLRGRVGRSHHQAY
Sbjct: 857  KVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHHQAY 916

Query: 920  AYLMVPDTEGLTKQAAQRLDAIQQMEELGSGFYLAMHDLEIRGTGEVLGESQSGNMTEIG 979
            AYL+ P  + +TK A +RL+AI  +E+LG+GF LA HDLEIRG GE+LGE QSG +  +G
Sbjct: 917  AYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQSVG 976

Query: 980  FQLYNEMLSEAVRALKAGQEPDLLSPLSVTTEINLHAPALLPDDYCGDVHLRLSFYKKLA 1039
            F LY EML +AV ALK+G+EP L   L   TE+ +  PALLP++Y  D++ RLS YK++A
Sbjct: 977  FTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIPDINTRLSMYKQIA 1036

Query: 1040 TAKTPDQIDTLLEEIVDRFGKLPPQAQTLIDTHRLRVLARPYGVVKVDAAPGIINITFKK 1099
            +  + D++  L  E++DRFGKLP  A  L+    L++ A    V K++A      + F  
Sbjct: 1037 SVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHERGGYVEFYP 1096

Query: 1100 DPPVDGMAIIQLIQKN-KHIKLAGNEKLRIERELKEPKERAQMVRDVLRSLGQ 1151
            +  ++ + +++L+Q   K + + G  KL+    L E   R Q V D+L++  Q
Sbjct: 1097 NADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADMLKNFQQ 1149