Pairwise Alignments

Query, 1160 a.a., Transcription-repair coupling factor from Variovorax sp. SCN45

Subject, 1171 a.a., transcription-repair coupling factor from Sinorhizobium meliloti 1021

 Score =  695 bits (1794), Expect = 0.0
 Identities = 444/1190 (37%), Positives = 650/1190 (54%), Gaps = 77/1190 (6%)

Query: 6    LTAGKRFTLPRPPLSADALLLAQLAMREKAAGRATAMFTADANDAQRLIDEIAFFAPELR 65
            L A +  T+   P  A+AL+LA+LA     AG   A   +D      L   + F AP++ 
Sbjct: 13   LAATREITIGPVPTGAEALVLAELAR----AGAPVAYILSDGQKVADLEQVLGFVAPDIP 68

Query: 66   CALFPDWETLPYDSFSPHQDLISERLATLWRI----SQKEADVVLVPATTALYRLAPPAF 121
                P W+ LPYD  SP  D  + RLA L  +     +    +VLV    AL R++P   
Sbjct: 69   VLTLPGWDCLPYDRVSPSADTSARRLAALSALIAHRRKPHPAIVLVTINAALQRISPQDV 128

Query: 122  LAGYTFHFKAKQKLEESKLKAQLTLAGYSHVTQVVSPGEYAVRGGLIDLFPMGSPVPFRV 181
            +    F  +   ++    L A+L   G+  V  V   GE+AVRGG++D++  GS  P R+
Sbjct: 129  IESLAFTARPGNQIRMDDLAARLERNGFERVPTVREMGEFAVRGGILDVYVPGSGEPLRL 188

Query: 182  DLFDDEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDEDARGRFRGRWRELLEGDPTKS 241
            D F D +++IR+FDP +QR++  V  + L P  E  +  +    FR ++  L        
Sbjct: 189  DFFGDTLEAIRSFDPASQRTIGQVRSLDLNPMSEVSLTPETISHFRKQYLSLFGAATRDD 248

Query: 242  RIYKDMGNGVATAGIEYYLPLFFDETATVFDYLGPDATVVLHGDLEPAFQHF-----WQD 296
             +Y+ +  G   AG+E++LPLF+D   TVFDYL     V  H   E A +       + D
Sbjct: 249  ALYQAVSEGRRYAGMEHWLPLFYDRLETVFDYLDGFRIVTDHLAREAAAERSKLVLDYYD 308

Query: 297  TN------ERYRLVRGDPERPALPPEALFLNAEQFYQ------------------RAKPH 332
                     + ++ +G P +P +PP+ L+L A+ F +                   A+  
Sbjct: 309  ARLASASPGKSQVTQGTPYKP-VPPDMLYLTAKGFGEALNDLNAVRLSPFTEHEGEARQV 367

Query: 333  AQLAIRGDVPTEAPYAEFD----RLPPF--AVVRGAEDPLVGLKAHIAKTPHRVLLIAES 386
              +  R  +    P  E D    R   F  AV   AE    G K         V++   +
Sbjct: 368  VNIEARQGLRWAKPAGEADNDGTRTNVFDQAVKHIAEKRAKGAK---------VIVSGWT 418

Query: 387  DGRRESLLDFLRASGV-NPPAFDSLAEFEASADEKVGIATAALASGFAWREQGIDLVTET 445
            +G  + LL  L   G+ N     +L++  +    +   A  +L +GF   E G DLV   
Sbjct: 419  EGSLDRLLQVLAEHGLANIRPVKALSDIGSLKPGEAASAVLSLEAGF---ETG-DLVVIG 474

Query: 446  ELFATAPTTRRRNKKQEQVSDVEALIKDLSELNVGDPVVHTAHGIGRYRGLIHMDLGQGT 505
            E         RR+K++++ +D    I +++ L+ G  VVH  HGIGR+ GL      +  
Sbjct: 475  EQDILGDRLVRRSKRRKRGAD---FIAEVTGLDEGSYVVHAEHGIGRFVGL------RTI 525

Query: 506  DAEGKPLLQEMLHLEYADKATLYVPVSQLHQISRYTGVSADEAPLHKLGSGQWEKAKRKA 565
            +A G P   + L L YAD A L++PV  +  +SRY G    +A L KLG   W+  K K 
Sbjct: 526  EAAGAP--HDCLELVYADDAKLFLPVENIELLSRY-GSEGTDAVLDKLGGVAWQARKAKL 582

Query: 566  AEQVRDSAAELLNIYARRAAREGHAFRYSPADYEVFANDFGFQETADQKAAIHAVVQDMI 625
             +++ D A  L+ I A R  R           Y+ FA  F + ET DQ  +I AV  D+ 
Sbjct: 583  KKRLLDMAGGLIRIAAERHTRHAPVLAAQDGVYDEFAARFPYDETEDQLNSIDAVRDDLG 642

Query: 626  SPQPMDRLVCGDVGFGKTEVALRAAFIAVTGGKQVAFLAPTTLLAEQHYQTLVDRFAKWP 685
              +PMDRLVCGDVGFGKTEVALRAAFIA   G QVA + PTTLLA QH++T  DRF   P
Sbjct: 643  RGRPMDRLVCGDVGFGKTEVALRAAFIAAMNGVQVAVVVPTTLLARQHFKTFSDRFRGLP 702

Query: 686  VKVAEMSRFRSAKEITAAAKGLAEGQVDIVVGTHKLLSQSVKFKNLGLLIIDEEHRFGVR 745
            +++ + SR   +K++    K +AEG+ DIVVGTH LL  S+KF NLGLLIIDEE  FGV+
Sbjct: 703  IRIQQASRLVGSKDLALTKKEVAEGKTDIVVGTHALLGSSIKFANLGLLIIDEEQHFGVK 762

Query: 746  HKEAMKAMRAEVDVLTLTATPIPRTLGMALEGLRDLSVIATAPQRRLAIKTFVRNEGTGV 805
            HKE +K ++ +V VLTL+ATPIPRTL +AL G+R+LS+I T P  R+A++TF+      V
Sbjct: 763  HKERLKELKTDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFISPFDALV 822

Query: 806  IREAVLRELKRGGQVYFLHNEVETIENRRQKLEEILPEARIAVAHGQMPERELERVMRDF 865
            IRE ++RE  RGGQ +++   V  +      L+  +PE ++AVAHGQMP  ELE +M  F
Sbjct: 823  IRETLMREHYRGGQSFYVCPRVSDLPEIHDFLKSDVPELKVAVAHGQMPATELEDIMNAF 882

Query: 866  VAQRYNLLLCSTIIETGIDVPTANTIVMSRADKFGLAQLHQLRGRVGRSHHQAYAYLMVP 925
               RY++LL +TI+E+G+DVPTANT+++ RAD FGLAQL+QLRGRVGRS  +A+A   +P
Sbjct: 883  YEGRYDVLLSTTIVESGLDVPTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLP 942

Query: 926  DTEGLTKQAAQRLDAIQQMEELGSGFYLAMHDLEIRGTGEVLGESQSGNMTEIGFQLYNE 985
              + LT  A +RL  +Q ++ LG+GF LA HDL+IRG G +LGE QSG++ E+GF+LY +
Sbjct: 943  VNKTLTGPAERRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQ 1002

Query: 986  MLSEAVRALKAGQEPDLLSPLSVTTEINLHAPALLPDDYCGDVHLRLSFYKKLATAKTPD 1045
            ML EAV  LK  +E   +     + +I++  P ++P++Y  D++LRL  Y++L       
Sbjct: 1003 MLEEAVAELKGEEE---IHDTGWSPQISVGTPVMIPEEYVPDLNLRLGLYRRLGELTDLK 1059

Query: 1046 QIDTLLEEIVDRFGKLPPQAQTLIDTHRLRVLARPYGVVKVDAAPGIINITFKKDPPVDG 1105
            +ID    E++DRFG LP + Q L+    ++ L R   V K+DA P  + + F+     + 
Sbjct: 1060 EIDGFGAELIDRFGPLPTEVQHLLKIVYVKSLCRTANVEKLDAGPKGVVVQFRNKEFPNP 1119

Query: 1106 MAIIQLIQKNKHI-KLAGNEKLRIERELKEPKER---AQMVRDVLRSLGQ 1151
             A++  I K   + K+  ++ +  +REL  P++R   A MV   L +L +
Sbjct: 1120 AALVGYIAKQGTVAKIRPDQSIFFQRELATPEKRLSGAAMVMTQLAALAK 1169