Pairwise Alignments

Query, 274 a.a., ABC-type amino acid transport/signal transduction system, periplasmic component/domain from Variovorax sp. SCN45

Subject, 265 a.a., Diaminopimelate-binding protein / L-cystine-binding protein from Pseudomonas syringae pv. syringae B728a

 Score = 72.0 bits (175), Expect = 1e-17
 Identities = 73/257 (28%), Positives = 114/257 (44%), Gaps = 14/257 (5%)

Query: 4   RIFLPLLPMLFLAAGTGAHADA--TLDKIKQRGKLTVGVILSGPPFGTIDPATQKPVGYN 61
           R FL     L L+AG    A A   L KIK  G L VG+  + PPF  +D  + K  G+ 
Sbjct: 8   RTFLFSAMGLMLSAGIAGQAMAGEQLQKIKDSGTLNVGLEGTYPPFSFVD-ESGKLTGFE 66

Query: 62  VELAEGVAKGLGVGLETVQVQPS---NRVQFLQQGKVDILIANMQWTQERSEILSF-VPT 117
           VE +E +AK LGV     ++QPS     +  L   ++D++I  +  + ER +   F  P 
Sbjct: 67  VEFSEALAKELGV---KAKIQPSKWDGILAALDSKRLDVVINQVTISDERKKKYDFSEPY 123

Query: 118 PFEEVGGAAIARKDSGLAKWEDLRGKPVCVSQGSNFTKPL-AEQYGAQIKAFRGQPESLL 176
               +    + +    +   +DL GK V V  G+N+ + L A    A +K +   P  + 
Sbjct: 124 TISGIQALVLKKNADTIKSVKDLSGKKVGVGLGTNYEEWLKANVPDAIVKTYDDDPSKIQ 183

Query: 177 ALKGGNCVAAVHVSPTLRELVTGNADWKDYAIVSPSDLIPSPSVIWVRKGEADTQAAIDR 236
            L  G   A +       E+    A  K+  + +        S I +RKGE +  AAID+
Sbjct: 184 DLSVGRIDAILVDRLAALEMA---AKTKNKLVPAGEAFSRQASGIALRKGEPELLAAIDK 240

Query: 237 IVQNWHRTGWLIEVEKK 253
            +      G L ++ +K
Sbjct: 241 AIDKLRADGTLKKLSEK 257