Pairwise Alignments

Query, 248 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 266 a.a., amino acid ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  105 bits (262), Expect = 9e-28
 Identities = 74/225 (32%), Positives = 117/225 (52%), Gaps = 16/225 (7%)

Query: 21  YAFLLDLGERQA--FLRGLLVTLELCLLTIPCSLAAGVAMAAALISGHRWLALPA--RAF 76
           Y  + + GE  A   L GLLVTL+L  +++  +LA G  +  AL+   R L   A    +
Sbjct: 47  YVLIFEDGEWWAGDLLHGLLVTLQLTGISLIFTLALG--LTTALLRQSRSLVGRALGTGY 104

Query: 77  VEVTRNTPTLVQLYCAFLVLNMLITRQLEGVGGNPLTPFVWVVIVVAIHKGAFHAEALRA 136
           + V RNTP LVQ+Y  + V   +I           L  F   V+ +A+ +GA+ AE  R 
Sbjct: 105 IAVVRNTPLLVQIYLLYFVFGPVIG----------LDRFATAVLALALFQGAYTAEVFRG 154

Query: 137 GIEAVPQVTLEAARSLGFSQRQLLWRVELPLAVRFALPSLVNNLVDLVKMTAVASAIAVG 196
           G+ ++PQ   EAARSLG S+    + V LP  ++  LP L N +V L+K +++ S +A+ 
Sbjct: 155 GLNSIPQGQYEAARSLGLSRFFTFYDVILPQLLQRTLPPLTNEMVSLIKNSSIVSVMAIF 214

Query: 197 DVTYESIMIWTQRDNVLELLLLILLYFGALTWLVSRAGSWLEARL 241
           D+T +   I ++     E+   +   +  LT  +S   +WLE +L
Sbjct: 215 DLTTQGRNIVSETAMPFEIWFSVAAIYLLLTLTLSALSAWLEHKL 259