Pairwise Alignments

Query, 248 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 290 a.a., amino acid ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  106 bits (264), Expect = 6e-28
 Identities = 71/240 (29%), Positives = 129/240 (53%), Gaps = 10/240 (4%)

Query: 6   LLAQAVAAIKPLGLNYAFLLDLGERQAFLRGLLVTLELCLLTIPCSLAAGVAMAAALISG 65
           L A  V A     + ++++ D     A L GL  TL + +  +   +  GV +A   ISG
Sbjct: 40  LFAGLVRAFSVGQIEWSYVRDFLFAPAILAGLYNTLLMTVAAMGLGIVLGVVIAIMRISG 99

Query: 66  HRWLALPARAFVEVTRNTPTLVQLYCAFLVLNMLITRQLEGVGG-------NPLTPFVWV 118
           +  L+L A  ++ V R  P L+QL   F   N+ +     G+ G       + +TPFV  
Sbjct: 100 NPVLSLIAIGYIWVFRGAPALLQLMLWF---NLALIFPTFGIPGLFEFRTVDVMTPFVAA 156

Query: 119 VIVVAIHKGAFHAEALRAGIEAVPQVTLEAARSLGFSQRQLLWRVELPLAVRFALPSLVN 178
           V+ + I +GA+ +E +R+G+ +V     EAAR++G +Q ++L R+ LP A+R  +P + N
Sbjct: 157 VLGLGISQGAYTSEVVRSGLLSVDSGQYEAARTIGMTQMKMLRRIVLPQAMRVMVPPVGN 216

Query: 179 NLVDLVKMTAVASAIAVGDVTYESIMIWTQRDNVLELLLLILLYFGALTWLVSRAGSWLE 238
            ++ +VK+T++AS I   ++ + + +I+     VLELLL+   ++  +  ++S    ++E
Sbjct: 217 EVIGMVKLTSLASVIQYSEILHNAQIIYFANTRVLELLLVASFWYLLVVSVLSIGQHYIE 276