Pairwise Alignments

Query, 267 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 219 a.a., amino acid ABC transporter permease from Methanococcus maripaludis S2

 Score = 93.6 bits (231), Expect = 3e-24
 Identities = 57/190 (30%), Positives = 100/190 (52%), Gaps = 10/190 (5%)

Query: 54  PALLWGLFTNIKISVLAMALGTVAGLVVGAL-SLSPLRFLRVVTRWYVQFFRNAPVLVLI 112
           P ++  +F  +KI++++  L  +  ++VG+  +++  + L +V   YV+ FR  P+L+ +
Sbjct: 11  PFIIDAVFVTLKITIMSFLLAVIIAVLVGSTRAMNFSKTLDLVLMAYVEVFRGTPLLIQL 70

Query: 113 YFTTYVFPFELHLVKWTVPFPDWIKVVLGLALPTSAVVAEIFRGAIQSIPSAQWEAAQSL 172
           +F  Y  P         +        VLGL+L   A ++EI R AIQS+P  Q+EAA+SL
Sbjct: 71  FFIYYGLP------SIGITMSSTFAAVLGLSLNGGAYISEIIRAAIQSVPVGQFEAAESL 124

Query: 173 AFRRSEIFRLIVLPQCLRRMLPPWMNLYASITMSTALASLVGAHDVVDTAQIASNTVART 232
              + E    IVLPQ  R  +PP +N ++SI   ++L S++    + +  +I      RT
Sbjct: 125 GMGKIESMVYIVLPQAFRITIPPLVNSFSSILKESSLISVLA---ITELTRIGQLIYTRT 181

Query: 233 DFTVLVYFTL 242
                +Y T+
Sbjct: 182 SRPFEIYLTI 191