Pairwise Alignments

Query, 533 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 538 a.a., peptide-binding periplasmic ABC transporter protein from Sinorhizobium meliloti 1021

 Score =  136 bits (342), Expect = 2e-36
 Identities = 138/549 (25%), Positives = 229/549 (41%), Gaps = 65/549 (11%)

Query: 10  IRSALLAALLAAGLAAHAAPPS---HSGTLTLLSTSEPTALVTIGNVATPILSVSAKVTE 66
           +R+ LLA +  A L  + A        G +T+    + + L           S+   + +
Sbjct: 1   MRNLLLAGVCTAALMGNPALADDIKQGGEMTVTYKDDVSTLDPAIGYDWQNWSMIKSLFD 60

Query: 67  GLLKYDYDVNP-QPQLATKWVISPDGLTYTFTLRQGVKWHDGKDFTSADVAYSIE----- 120
           GL+ Y       +P LA  + IS DG  +TF LR+GVK+H+G++ T+ DV YSIE     
Sbjct: 61  GLMDYVPGTTELRPDLAESYEISEDGKIFTFKLRKGVKFHNGRELTAQDVKYSIERVVNP 120

Query: 121 -----------LLKKIHPRGRNTFANLTAIDTPDKYTAILRLSKPAPYLIRALVATETPI 169
                       +K +          L+ I   D +T    L++P    +  +      +
Sbjct: 121 ATQSPGAGFFATIKGVEEASAGKGGELSGITVQDPHTIRFELTRPDATFLHVMALNFAHV 180

Query: 170 VPKHIYE--GTDPANNPNNNAPIGTGPFKFKEWVRGSHIVYERNNDYWDKPKPFVDQLIV 227
           VPK   E  G D   NP     +G+G FK  EW  G  +V+ER  DYW++  P +D++  
Sbjct: 181 VPKEEVEKHGADFGKNP-----VGSGAFKLAEWTLGQRLVFERFTDYWNEGLPKLDRITF 235

Query: 228 RFVTDPAAAAVAFETGTVDLGYRTPVPLADLERLKKVPALR--FETKGNSYSSNVTRLEF 285
               +P  A +  + G +D+     +P A    +   P  +      G  ++  VT    
Sbjct: 236 EVGQEPVVALLRLQNGEIDVP-GDGIPPAKFVEVTNDPNFKDLIIRGGQLHTGYVT---M 291

Query: 286 NLDNEYFKNEKVRQAVAHAIDRNVIVKVVNYGYGQVSYSPIAPGLKAFHDPAPSPYAFDV 345
           N+    F   +VR+AV  AI+++ I++++N G    +  P+ P +  +     + YA+D 
Sbjct: 292 NVKMAPFDKVEVRKAVNMAINKDRILRIIN-GRAVAANQPLPPSMPGYAKDY-AGYAYDP 349

Query: 346 KKANALLDEAGFPKKAGGVRFSVPLDFNPIGADGPRLADYLRSALARIGIAVTVRAQDPS 405
           + A  LL++AG      G  FS  L         PR+A  ++  L  IGI  ++++   +
Sbjct: 350 EGAKKLLEQAGL-----GDGFSTELYVMNTDPQ-PRIAQAIQQDLKAIGITASIKSLAQA 403

Query: 406 AFIKRIYTDRDFAFTHNGA----------SNLFDPTVGVQRLYWSKNFIKGVPFS-NGTH 454
             I     +       +G           SN + P +G             VP   N + 
Sbjct: 404 NVIAAGGEENQAPMIWSGGMAWIADFPDPSNFYGPILGCG---------GAVPGGWNWSW 454

Query: 455 YQNPVVDKLLEDAAVENDPGK---RLKLFKDFQDTVARDVPDLNLYQPVFITIANQRV-H 510
           Y N  +DK   +A    DP K   R  L++D    +  D P   ++     TI ++R+  
Sbjct: 455 YCNEELDKKAAEADAIADPAKAAEREALWRDIYLKIMEDAPWAPIFNEERFTIRSERIGG 514

Query: 511 DHSLTADGV 519
           D  L  D V
Sbjct: 515 DDKLFVDPV 523