Pairwise Alignments

Query, 533 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 504 a.a., peptide ABC transporter from Sinorhizobium meliloti 1021

 Score =  139 bits (350), Expect = 2e-37
 Identities = 130/506 (25%), Positives = 224/506 (44%), Gaps = 33/506 (6%)

Query: 11  RSALLAALLAAGLAAHAAPPSHSGTLTLLSTSEPTALVTIGNVATPILSVSAKVTEGLLK 70
           R+A  AAL+ +   A AA     G L++    + T    I +       V + V + L++
Sbjct: 10  RAAFAAALMLSAGYAEAA-----GILSIGRREDSTTFDPIKSAQNVDNWVFSNVFDVLVR 64

Query: 71  YDYD-VNPQPQLATKWVISPDGLTYTFTLRQGVKWHDGKDFTSADVAYSIELLKKIHPR- 128
            D      +P LA  W +S DGLTYTF +R   K+ DG   T+ D A+S+  ++      
Sbjct: 65  VDKTGTKLEPGLAESWTLSDDGLTYTFKIRDA-KFSDGSPITAEDAAFSLLRIRDHEGSL 123

Query: 129 GRNTFANLTAIDTPDKYTAILRLSKPAPYLIRALVATETPIVPKHIYEGTDPANNPNNNA 188
             +++  +   +  D  T +++L  P+   +  L      ++ K   E  + A      A
Sbjct: 124 WSDSYKIIETAEAADPKTLVVKLKTPSAPFLSTLALPNVSVLSKKAVEAGEDAFAELPTA 183

Query: 189 PIGTGPFKFKEWVRGSHIVYERNNDYWDKPKPFVDQLIVRFVTDPAAAAVAFETGTVDLG 248
              +G F  KEW RG  ++ E+N ++W   +  +D +    V D     +  + G +D  
Sbjct: 184 --SSGAFTVKEWRRGDRVILEKNPNFWQADRVKLDGVEWISVPDDNTRMLNVQAGQLDTA 241

Query: 249 YRTPVPLADLERLKKVPALRFETKGNSYSSNVTRLEFNLDNEYFKNEKVRQAVAHAIDRN 308
               VP + +E LKK P L   T     S+    L  N ++     ++VRQA+  AID+ 
Sbjct: 242 IF--VPFSRVEELKKDPNL---TVHIDTSTREDHLLINHEHGMLAKKEVRQALDMAIDKK 296

Query: 309 VIVKVVNYGYGQVSYSPIAPGLKAFHDPAPSPYAFDVKKANALLDEAGFPKKAGGVRFSV 368
            IV  V +G G V+ S I  G   +H  A   Y +D +KA A+L EAG          ++
Sbjct: 297 AIVDTVTFGIGTVANSYIPKG-SLYHYDANYQYPYDPEKAKAMLAEAGASD------LTL 349

Query: 369 PLDFNPIGADGPRLADYLRSALARIGIAVTVRAQDPS-AFIKRIYTDRDFAFTHNGASNL 427
               N       ++A  L+   A+ G+ V ++  D S ++   +  D D +  +   +++
Sbjct: 350 NYVVNAGNEVDEQIAVLLQQQFAKAGVTVNLQKVDASQSWDMLVAGDYDISVMY-WTNDV 408

Query: 428 FDPTVGVQRLYWSKNFIKG--VPFSNGTHYQNPVVDKLLEDAAVENDPGKRLKLFKDFQD 485
            DP            F+ G     +  T Y +  V +L+  A +E DP KR  ++ D Q 
Sbjct: 409 LDPDQ-------KTTFVLGHDTNMNYMTRYNSEKVKELVAAARLELDPAKREAMYVDIQK 461

Query: 486 TVARDVPDLNLYQPVFITIANQRVHD 511
           T   DV  ++LY   ++ ++ + + +
Sbjct: 462 TAKDDVHWIDLYYSPYLNVSRKNIEN 487