Pairwise Alignments

Query, 533 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

Subject, 534 a.a., Twin-arginine translocation pathway signal (NCBI) from Rhodospirillum rubrum S1H

 Score =  344 bits (883), Expect = 4e-99
 Identities = 210/534 (39%), Positives = 299/534 (55%), Gaps = 8/534 (1%)

Query: 1   MFFSSSSFPIRSALLA---ALLAAGLAAHAAPPSHSGTLTLLSTSEPTALVTIGNVATPI 57
           M  S  SF   +ALLA   AL     A  A  P   G LT   +SE   L      +T +
Sbjct: 1   MSLSRRSFLASTALLAGAAALPRFSWAQGAPAPVAGGVLTAHLSSEQRILNPALRASTGV 60

Query: 58  LSVSAKVTEGLLKYDYDVNPQPQLATKWVISPDGLTYTFTLRQGVKWHDGKDFTSADVAY 117
             +++K+ E L+    D  P P LAT+W  + DG + TFTLR+GVKWHDGK FTSADV Y
Sbjct: 61  YVITSKIIESLVDLGPDGAPTPVLATRWEAAADGKSVTFTLREGVKWHDGKPFTSADVQY 120

Query: 118 S-IELLKKIHPRGRNTFANLTAIDTPDKYTAILRLSK--PAPYLIRALVATETPIVPKHI 174
           S +EL KK    G      L A+DTPD  TAI R S+  P P L+RAL A    +VP+H+
Sbjct: 121 SAMELWKKHLNYGTQLQRYLEAVDTPDATTAIFRYSRTMPLPLLLRAL-ADLGYVVPRHL 179

Query: 175 YEGTDPANNPNNNAPIGTGPFKFKEWVRGSHIVYERNNDYWDKPKPFVDQLIVRFVTDPA 234
           +EGT+   NP N APIGTGPFKF E+ RG +IV ERN +YW K +P++D+++ RF+TD +
Sbjct: 180 FEGTNVLENPANTAPIGTGPFKFVEYQRGQYIVAERNPEYWRKGEPYLDRVVWRFITDKS 239

Query: 235 AAAVAFETGTVDLGYRTPVPLADLERLKKVPALRFETKGNSYSSNVTRLEFNLDNEYFKN 294
           AA+ A ETG V +   T + L+D+ERL K       ++GN  +S    +EFN   +   +
Sbjct: 240 AASAALETGQVQISAYTQLALSDIERLAKDSRFEVSSRGNEANSFNNTVEFNHRRKELAD 299

Query: 295 EKVRQAVAHAIDRNVIVKVVNYGYGQVSYSPIAPGLKAFHDPAPSPYAFDVKKANALLDE 354
            +VR+A+AHA+D +  V+   YG G+ +   I    +AF+     PY FD KKA ALLDE
Sbjct: 300 VRVRRAIAHAVDVDFFVENFLYGRGKRATGFIPSISQAFYPGGAFPYPFDTKKAEALLDE 359

Query: 355 AGFPKKAGGVRFSVPLDFNPIGADGPRLADYLRSALARIGIAVTVRAQDPSAFIKRIYTD 414
           AG+P++ GG RFS+ L     G D P+ A +L+ +LA +GI V +   D +  +  IY D
Sbjct: 360 AGYPRQKGGERFSLRLLPILNGEDVPQFATFLQQSLAEVGIKVEIVQLDVAGALSAIYKD 419

Query: 415 RDFAFTHNGASNLFDPTVGVQRLYWSKNFIKGVPFSNGTHYQNPVVDKLLEDAAVENDPG 474
            +F           DP V    +++     KG P++N   +++  VD L++DAA E DP 
Sbjct: 420 WNFDLATGWHQYRGDPAVST-TVWFRSGSPKGAPWTNQFGWESAEVDTLIDDAAAEIDPV 478

Query: 475 KRLKLFKDFQDTVARDVPDLNLYQPVFITIANQRVHDHSLTADGVESNLADVWV 528
           KR  L+    D +  ++P     +  F+++ N+ V +H        S+  D W+
Sbjct: 479 KRKALYAQLVDVINEELPVWFATERQFVSVTNKVVQNHHNIPRWPSSDWHDTWI 532