Pairwise Alignments

Query, 531 a.a., Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein CzcB from Variovorax sp. SCN45

Subject, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score = 89.4 bits (220), Expect = 2e-22
 Identities = 72/334 (21%), Positives = 149/334 (44%), Gaps = 22/334 (6%)

Query: 186 FNQQEGKVNMTDAQIKASSITLDTSAPESIRSGLQFPGEIRFNEDRTAHIVPRVAGVVDS 245
           F QQ+    + +       +T+ T+ P      ++  G I  N+  T  +    AGV+D 
Sbjct: 25  FKQQKIAEYLANRPEPEFPVTVVTANPVDWVPVIEAIGFIEPNQGVT--LTTETAGVIDQ 82

Query: 246 VSANLGERVKKGQVLAVVSSAAISETRSELQAAQRRRELAKTTYDREKSLWEQKISPEQD 305
           ++   G +V K Q L ++ SA     R+ L++ + R   AK  Y+R K L+         
Sbjct: 83  ITFESGTQVAKDQPLVLLDSAV---ERANLKSTEARLPAAKAKYERYKGLF--------- 130

Query: 306 VLQAQQALREAEISVANATQKLLTVGASTSSSSLGRFELRAPFDGMVVEKHIALGESVKE 365
              A+ ++ +     A A+   L+    +  +++ R E++APF G++  +++ LG+ ++ 
Sbjct: 131 ---AKGSISKESYDEAEASYYALSADIESLKATIARREIKAPFAGVIGIRNVFLGQYLQP 187

Query: 366 DASVFTISDLSNVWAEMNVPARDLQQVRVGERVVVRSGAFDATT-NGTVAYVGSLIGEQT 424
              +  + D S +     VP RD+ ++ + + V +   A+  T+  G+++ +   +  Q+
Sbjct: 188 GTDIVRLEDTSVMRLRFTVPQRDISRISLDQEVDIFVDAYPQTSFKGSISAIEPAVSVQS 247

Query: 425 RTARARVVLPNPQGAWRPGLFVSVEVLASEVISPVTVASSAL-QTIEDKPVVFLKVPGG- 482
              + +  +PN  G  R G+F    ++  ++ + VT+  +A+  T+    V  +    G 
Sbjct: 248 GLIQVQADIPNSDGKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYIVSEENGE 307

Query: 483 --FVPQPVQIGRTDGKRVEIVSGLKAGAKYAAAG 514
                  V++G        I+ G+K G      G
Sbjct: 308 KRVQQHVVKVGERSESIAHILEGVKPGDVVVTTG 341