Pairwise Alignments

Query, 531 a.a., Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein CzcB from Variovorax sp. SCN45

Subject, 417 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score = 83.2 bits (204), Expect = 2e-20
 Identities = 70/287 (24%), Positives = 127/287 (44%), Gaps = 24/287 (8%)

Query: 187 NQQEGKVNMTDAQIKASSITLDTSAPES--IRSGLQFPGEIRFNEDRTAHIVPRVAGVVD 244
           N +    N  + +  A ++ + ++  E+  +   L   G++  N  R+  I   V+G V 
Sbjct: 46  NGKAANANTANVKAGARAVPIASARVEAHEVAQHLSLVGKLAAN--RSVQIAAEVSGKVQ 103

Query: 245 SVSANLGERVKKGQVLAVVSSAAISETRSELQAAQRRRELAKTTYDREKSLWEQKISPEQ 304
           +++ +  + V +GQVL  +  A      +E +A            D  + L E K     
Sbjct: 104 AINLSDNQAVSQGQVLVHLEDAKAKANLAEAKAYLN---------DERRKLGEYKR---- 150

Query: 305 DVLQAQQALREAEISVANATQKLLTVGASTSSSSLGRFELRAPFDGMVVEKHIALGESVK 364
             L  Q A+ + EI    A+  +       + + L    L+APFDG++     +LG+ V 
Sbjct: 151 --LIKQHAITQTEIDAQLASVDIAEARLQAAQADLDYHTLKAPFDGVIGLVDFSLGKLVS 208

Query: 365 EDASVFTISDLSNVWAEMNVPARDLQQVRVGERVVVRSGAFDATT-NGTVAYVGSLIGEQ 423
             + + ++ DLS++  ++ +P R L Q+ +G  VV  S A+     +G V  +   I  +
Sbjct: 209 VGSELVSLDDLSSMRLDLQIPERYLSQIYLGMPVVASSSAWPGEQFHGQVVAMAPRINSE 268

Query: 424 TRTARARVVLPNPQGAWRPGLFVSVEVLASEVISPVTVASSALQTIE 470
           T   + RV   NP    RPG+ +S  +      +PVT A   +Q +E
Sbjct: 269 TLNLKVRVNFDNPSLQLRPGMLISARL----DFAPVTQAVVPVQALE 311