Pairwise Alignments

Query, 938 a.a., DNA polymerase I (EC 2.7.7.7) from Variovorax sp. SCN45

Subject, 283 a.a., flap endonuclease Xni from Vibrio cholerae E7946 ATCC 55056

 Score =  102 bits (255), Expect = 2e-26
 Identities = 75/249 (30%), Positives = 117/249 (46%), Gaps = 11/249 (4%)

Query: 7   LLLVDGSSYLYRAFHAMPDLRAVPGDPKSPATGAIRGMINMMTALRREVRADYAACIFD- 65
           L+++D  + + R   A PD    P D    A    R +  ++     E +  +   +FD 
Sbjct: 29  LVIIDALNLIRRVHSAQPD----PNDITRTAETTTRTLQRIIN----EAQPSHMIAVFDH 80

Query: 66  -APGKTFRDDWYPEYKANRSPMPDDLRSQIDPIHEVVKLLGWPVLSVPDVEADDVIGTLA 124
               + +R +  P YKANR PMPD L+  ID I +    LG   L     EADD++ TLA
Sbjct: 81  HLSDRGWRAELLPTYKANRKPMPDVLQQGIDAIQDAWWQLGIDSLLSEGDEADDLVATLA 140

Query: 125 KIAAAQGVEVIVSSGDKDLSQLVDEHITIIDTMNGKKRDVAGVTAEFGVPPHLMVDYQTL 184
              AA   +V + S DK   QL+   + I D    +  D   +  EFGV P  + DY  L
Sbjct: 141 CKVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYWGL 200

Query: 185 VGDSVDNVPGVPKVGPKTAAKWLLEYGSLDALVERAAEVKGAAGENLRGALDKLPLSKRL 244
            G S   +PGV  +GPK A + L ++ S++     + E+     + L   ++   + K++
Sbjct: 201 TGVSSSQIPGVAGIGPKAAKEILNQFSSIEE-AYASPELPAKYRKKLDPHIEMARICKQV 259

Query: 245 VTIRTDCEL 253
             ++TD EL
Sbjct: 260 SALKTDIEL 268