Pairwise Alignments

Query, 813 a.a., ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) from Variovorax sp. SCN45

Subject, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

 Score =  624 bits (1610), Expect = 0.0
 Identities = 349/802 (43%), Positives = 483/802 (60%), Gaps = 93/802 (11%)

Query: 20  LLKNLNAEQLAAVTLPAGNALILAGAGSGKTRVLTTRIAWLLQTGQVSAGGILAVTFTNK 79
           LL  LN +Q  AV  P  N LILAGAGSGKTRVL  RIAWL+   + S   ++AVTFTNK
Sbjct: 7   LLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNK 66

Query: 80  AAKEMMTRLTAILPVNVRGMWIGTFHGLCNRLLRAHWKLANLPSTFQILDTQDQLSAIKR 139
           AA EM  R+  ++     GMW GTFHG+C+R+LRAH+  A L   FQI+D+ DQ   +KR
Sbjct: 67  AAAEMRGRIEELMHGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKR 126

Query: 140 LMKQFNVDDERFPAKQTQWFIAGAKEDGLRPGDIEVRSDDDRKKVELYQLYEEQCQREGV 199
           L+K  N+DD+++PA+Q  W+I   K++GLRP  I       +  ++LY  Y+E C R G+
Sbjct: 127 LIKAHNLDDKQWPARQVAWWINNQKDEGLRPTHINAFDPVTQTYLKLYTAYQEACDRAGL 186

Query: 200 VDFGELMLRSYELLRDNAPVREHYQRRFRHILIDEFQDTNRLQYAWIKMLAGNTVGGQFE 259
           VDF E++LR+ ELLR N  +REHYQ RF+HIL+DEFQDTN +QYAW++M+A         
Sbjct: 187 VDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMA--------- 237

Query: 260 PGRDNSVIAVGDDDQSIYAFRGARVGNMTDFVREFDVRHQIKLEQNYRSYSNILDSANEL 319
            G  ++V+ VGDDDQSIY +RGARV N+  F REF   + I+LEQNYRS   IL+++N L
Sbjct: 238 -GAQSNVMIVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTL 296

Query: 320 ISHNKKRLGKNLRTDQGPGEPVRVYESTTDLAEAQWMVEEMRQLARDGFDRKEMAVLYRS 379
           I++N +R+GK L TD   GEP+ VY +  +L EA+++V +++     G    + A+LYR+
Sbjct: 297 IANNSERMGKQLWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGTLTDCAILYRN 356

Query: 380 NAQSRVIETALFNASVPYRVYGGLRFFERAEIKHALAYLRLLENKDDDTSFLRVVNFPPR 439
           NAQSRV+E AL  AS+ YR+YGG+RFFER EIK AL+YLRL+ N++DDT+F RV+N PPR
Sbjct: 357 NAQSRVLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPR 416

Query: 440 GIGARTLETLQDAARAAGRSLHDAV------SVVGGKAGANLTGFVAKIDVLREQTQGVS 493
           G+G +TLET++ AAR  G +L DA        V+ G+A + L+ FV  I+ L E+   + 
Sbjct: 417 GLGDKTLETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDMP 476

Query: 494 LREIIELVLDHSGLVEHYKADR--EGADRIENLDELVNAAESFVTQEGFGRDAVALPVDE 551
           L  + +  +  SGL+E Y+ ++  +   RIENL+ELV A   F                 
Sbjct: 477 LHVLTDHAVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQF----------------- 519

Query: 552 LRQSPASQGIDLTRPVIDEPLAPDAETGETLSPLAAFLTHAALESGDNQAQAGQDAVQLM 611
                            ++P     E  + ++ L AFLTHAALE+G+ QA    DAVQLM
Sbjct: 520 -----------------EKP-----EEAQEMTMLTAFLTHAALEAGEGQADEHDDAVQLM 557

Query: 612 TVHAAKGLEFDCVFITGMEEGLFPHENSMSDFESLEEERRLMYVAITRARKRLYLSHSQT 671
           T+H+AKGLEF  VF+ G+EEG+FP + S  +   LEEERRL YV +TRA ++LY+++++ 
Sbjct: 558 TLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCYVGMTRAMQKLYITYAEM 617

Query: 672 RMLHGQTRYNVKSRFFEELPQGALKWLTPKNQGFGGGTSAFGYGGGYGSTRGGAGGGGGY 731
           R L+GQ +Y+  SRF  ELP+G L  +  K Q                            
Sbjct: 618 RRLYGQDKYHKPSRFIRELPEGCLDEVRMKAQ---------------------------- 649

Query: 732 GGGSSYGGGSRDKDTFASPPVPPQKTAPSHGLRSGMQVFHNKFGEGTVTALEGTGDDARA 791
                    SR   T        +++    G   G +V H KFGEGT+   EG+G  +R 
Sbjct: 650 --------VSRPTSTGRFSQTVVKESFNETGFNLGSRVRHPKFGEGTIINFEGSGPQSRV 701

Query: 792 QVKFARHGVKWLALSVAKLTPI 813
           QV F   G+KWL  + A+L  +
Sbjct: 702 QVAFNGEGIKWLVTAYARLEKV 723