Pairwise Alignments

Query, 813 a.a., ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) from Variovorax sp. SCN45

Subject, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

 Score =  368 bits (944), Expect = e-106
 Identities = 261/687 (37%), Positives = 372/687 (54%), Gaps = 52/687 (7%)

Query: 24  LNAEQLAAVTLPAGNALILAGAGSGKTRVLTTRIAWLLQTGQVSAGGILAVTFTNKAAKE 83
           LN  Q  AV   +G  L+LAGAGSGKTRV+T +IA+L+Q     A  I AVTFTNKAA+E
Sbjct: 3   LNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAARE 62

Query: 84  MMTRLTAILPVNV-RGMWIGTFHGLCNRLLRAHWKLANLPSTFQILDTQDQLSAIKRLMK 142
           M  R+   L     RG+ + TFH L   ++R  +K   L + F + D QDQL+ +K L +
Sbjct: 63  MKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKELTE 122

Query: 143 QFNVDDERFPAKQTQWFIAGAKEDGLRPGDIEVRSDDDRKKV--ELYQLYEEQCQREGVV 200
           +  +D ++   +     I+  K D L P   +  +  +++ +    ++LY++Q Q    +
Sbjct: 123 K-QLDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKGEQQLLFAHCFELYQKQMQSYNAL 181

Query: 201 DFGELMLRSYELLRDNAPVREHYQRRFRHILIDEFQDTNRLQYAWIKMLAGNTVGGQFEP 260
           DF +L+L    LLR N  VR+ +Q R R++L+DE+QDTN  QY  +K+L G       E 
Sbjct: 182 DFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVG-------ER 234

Query: 261 GRDNSVIAVGDDDQSIYAFRGARVGNMTDFVREFDVRHQIKLEQNYRSYSNILDSANELI 320
           GR   +  VGDDDQSIY++RGA+  N+     +F     IKLEQNYRS S IL +AN LI
Sbjct: 235 GR---LTVVGDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILI 291

Query: 321 SHNKKRLGKNLRTDQGPGEPVRVYESTTDLAEAQWMVEEMRQLARDGFDRKEM---AVLY 377
           ++N     K L ++   GE ++V  +  +  EA+ ++ E+  +A    +R E    A+LY
Sbjct: 292 ANNPHVYQKALFSELAEGEKLKVILANNEDHEAERVIAEI--IAHKFLNRTEYRDYAILY 349

Query: 378 RSNAQSRVIETALFNASVPYRVYGGLRFFERAEIKHALAYLRLLENKDDDTSFLRVVNFP 437
           R N QSR+IE +L    VPY++ GG  FF RAEIK  +AYLR+L N DDD +FLR+VN P
Sbjct: 350 RGNHQSRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTP 409

Query: 438 PRGIGARTLETLQDAARAAGRSLHDAVSVVGGKAGANLTGFVAKIDVLREQTQGVSLREI 497
            R IG  TLE L   A   G+SL  A   +G                L +   G  L  +
Sbjct: 410 KREIGPATLEKLGSYANMRGKSLFTASFELG----------------LEQHLSGRGLENL 453

Query: 498 IELVLDHSGLVEHYKADREGADRIENLDELVNAAESFVTQEGFGRDAVALP-VDELRQSP 556
                      E   A  + A+R  N  E V A    +  E +  +  A P   E+R   
Sbjct: 454 -------RRFTEWLVAIADNAER-GNTVEAVRALVRDIRYEDWLYETSASPKAAEMRMKN 505

Query: 557 ASQGIDLTRPVIDEPLAPDAETGE-TLSPLAAFLT-HAALESGDNQAQAGQDAVQLMTVH 614
            S   DL   ++ +    + +  E TL  +   LT    +E G+    +  DAVQLMT+H
Sbjct: 506 VS---DLYSWIVADLEGDNPDQQEKTLKEVVQRLTLRDMMERGEENDDS--DAVQLMTLH 560

Query: 615 AAKGLEFDCVFITGMEEGLFPHENSMSDFESLEEERRLMYVAITRARKRLYLSHSQTRML 674
           A+KGLEF  V++ G EEG+ PH+ S+ D E++EEERRLMYV ITRA++ L     + R  
Sbjct: 561 ASKGLEFPYVYLIGAEEGILPHQTSI-DEENVEEERRLMYVGITRAQRELTFIVCKERRQ 619

Query: 675 HGQTRYNVKSRFFEELPQGALKWLTPK 701
            G+     +SRF +ELPQ  ++W   K
Sbjct: 620 FGELIKPSQSRFLDELPQDDIEWEVKK 646