Pairwise Alignments

Query, 813 a.a., ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) from Variovorax sp. SCN45

Subject, 689 a.a., UvrD2 DNA helicase from Sinorhizobium meliloti 1021

 Score =  230 bits (586), Expect = 2e-64
 Identities = 203/691 (29%), Positives = 317/691 (45%), Gaps = 99/691 (14%)

Query: 21  LKNLNAEQLAAVTL--------PAGNALILAGAGSGKTRVLTTRIAWLLQTGQVSAGGIL 72
           L+ LN  Q  AV           AG  LI+AGAGSGKT  L  R+A L+  G      IL
Sbjct: 7   LEKLNERQRCAVEYGIGAEEGAQAGPLLIIAGAGSGKTNTLAHRVAHLIVNG-ADPRRIL 65

Query: 73  AVTFTNKAAKEMMTRLTAILPVNV---RGM------WIGTFHGLCNRLLRAHWKLANLPS 123
            +TF+ +AA EM  R+  I    +    GM      W GTFHG+  RLLR + +   L +
Sbjct: 66  LMTFSRRAAAEMSRRVERICAQVLGRSSGMMTDALSWAGTFHGIGARLLRIYAEQIGLNA 125

Query: 124 TFQILDTQDQLSAIKRLMKQ--FNVDDERFPAKQTQWFIAGAKEDGLRPGDIEVRSDD-- 179
            F I D +D    I  +  +  F+  + RFP K T   I        R  + E+R ++  
Sbjct: 126 EFTIHDREDSADLINLIRHELGFSKTESRFPTKGTCLAIYS------RTVNAEMRLNEVL 179

Query: 180 ----------DRKKVELYQLYEEQCQREGVVDFGELMLRSYELLRDNAPVREHYQRRFRH 229
                     +++  EL+  Y E  Q + V+D+ +L+L   +++ D A + +    RF +
Sbjct: 180 RSWYPWVAGWEQQLQELFAGYVEAKQAQNVLDYDDLLLYWAQMVSD-ASLADDIGNRFDY 238

Query: 230 ILIDEFQDTNRLQYAWIKMLAGNTVGGQFEPGRDNSVIAVGDDDQSIYAFRGARVGNMTD 289
           +L+DE+QDTN+LQ + +  L  +  G          +  VGDD QSIY+FR A V N+ D
Sbjct: 239 VLVDEYQDTNKLQSSVLLALKPDGRG----------LTVVGDDAQSIYSFRAATVRNILD 288

Query: 290 FVREFDVRHQI-KLEQNYRSYSNILDSANELISHNKKRLGKNLRTDQGPGEPVRVYESTT 348
           F ++F    +I  L++NYRS   IL +AN +I   ++R  KNL TD+   E  ++     
Sbjct: 289 FPKQFAPAAEIVTLDRNYRSTQPILAAANGVIDLARERFTKNLWTDRESAERPKLLTVKD 348

Query: 349 DLAEAQWMVEEMRQLARDGFDRKEMAVLYRSNAQSRVIETALFNASVPYRVYGGLRFFER 408
           +  +A  +VE++      G   K+ AVL+R+++ S  +E  L   ++P+  +GGL+F + 
Sbjct: 349 EADQANCIVEQVLANRESGMLLKQQAVLFRTSSHSGPLEVELTRRNIPFVKFGGLKFLDS 408

Query: 409 AEIKHALAYLRLLENKDDDTSFLRVVNFPPRGIGARTLETLQDAARAAGRSLHDAVSV-V 467
           A +K  LA LR  +N  D  +  R++   P G+G +T   + D   A    L     V  
Sbjct: 409 AHVKDMLAVLRFAQNPRDRVAGFRLLQMLP-GVGPQTAGKILDTIAADPEPLMALGEVPA 467

Query: 468 GGKAGANLTGFVAKIDVLREQTQGVSLREIIELVLDHSGLVEHYKADREGAD-RIENLDE 526
             ++G +    V  +  LR+           E+ +       H +   E A+ R  +L +
Sbjct: 468 PPRSGTDWMSLVELLQALRKPGSAWP----TEIEMARMWYEPHLERIHEDAETRRADLVQ 523

Query: 527 LVNAAESFVTQEGFGRDAVALPVDELRQSPASQGIDLTRPVIDEPLAPDAETGETLSPLA 586
           L   A  + ++E F                      LT   +D P A   + G  L    
Sbjct: 524 LEQIAAGYPSRERF----------------------LTELTLDPPDATSDQAGVPL---- 557

Query: 587 AFLTHAALESGDNQAQAGQDAVQLMTVHAAKGLEFDCVFITGMEEGLFPHENSMSDFESL 646
                             +D + L T+H+AKG E+  VF+  + +G  P + +      L
Sbjct: 558 ----------------LDEDYLILSTIHSAKGQEWRSVFMLNVVDGCIPSDLATGTSHEL 601

Query: 647 EEERRLMYVAITRARKRLYLSHSQTRMLHGQ 677
           EEERRL+YV +TRA+ +L L   Q     GQ
Sbjct: 602 EEERRLLYVGMTRAKDQLALMVPQRFFTGGQ 632