Pairwise Alignments

Query, 813 a.a., ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) from Variovorax sp. SCN45

Subject, 678 a.a., UvrD/REP helicase (RefSeq) from Shewanella loihica PV-4

 Score =  118 bits (295), Expect = 1e-30
 Identities = 167/681 (24%), Positives = 274/681 (40%), Gaps = 110/681 (16%)

Query: 20  LLKNLNAEQLAAVTLPAGNALILAGAGSGKTRVLTTRIAWLLQTGQVSAGGILAVTFTNK 79
           + K L  EQ   V   AG+ALI A  GSGKT  L  R+  L++TG V  G IL + +   
Sbjct: 1   MTKRLTWEQTRVVRHDAGHALIKAVPGSGKTTTLVKRVERLIKTG-VEPGSILILMYNKS 59

Query: 80  AAKEMMTRLTAILPVNVRGMWIGTFHGLCNRLLRAHWKLANLPSTFQILDTQDQLSAIKR 139
           A      +L   L  +     + TFH L  +++    +    P    I     +   + +
Sbjct: 60  ATVSFSDKLKLALKSDAIPE-VRTFHSLALKIVALAERQQLTPKKMLITPGNYRYDELVK 118

Query: 140 LMKQFNVDDERFPAKQT-----QWFIAGAKEDGLRPGDIEVRSDDDRKKVEL---YQLYE 191
              +     +    +Q+     + F++  +   + P D        + K E    Y  Y 
Sbjct: 119 QAYRVGCSYDSGYIEQSDITDFETFVSRCRASAVTPADAAADPTFSKIKPEFIRAYGCYC 178

Query: 192 EQCQREGVVDFGELMLRSYELLRDNAPVREHYQRRFRHILIDEFQDTNRLQYAWIKMLAG 251
           E  +  G+  F + M+ +  LLR    +      RF+HI++DE+QD N +Q+  I++L  
Sbjct: 179 ELLEANGLRTFEDSMIEAVSLLR----IYPGLVARFKHIIVDEYQDVNLVQHEMIRLLT- 233

Query: 252 NTVGGQFEPGRDNSVIAVGDDDQSIYAFRGARVGNMTD-FVREFDVRHQIKLEQNYRSYS 310
                  +P  D SV+ VGD +Q IY +RGA+   M   F ++F      +L   +R   
Sbjct: 234 -------KP--DTSVMVVGDLNQCIYEWRGAQPDFMDGLFEQQFPNTTVFQLSCTFRFGH 284

Query: 311 NILDSANELISHNKKRLGKNLRTDQGPGEPVRVYESTTDLAEAQWMVEE--MRQLARDGF 368
            +   AN +I  N  +L +           + V   +T   E +  ++      L+    
Sbjct: 285 ELSLIANSVIRRNSSKLTR-----------LCVSHPSTPKTEVKLHLDNCLSEVLSAIAT 333

Query: 369 DRKEMAVLYRSNAQSRVIETALFNASVPYR-VYGGLRFFERAEIKHALAYLRLLENKDDD 427
           +    A+L RSNA+   +E  L      YR + G    + R+EI   +  + L    D  
Sbjct: 334 ENGSQAILSRSNARLTEVELVLRLCGRTYRYLNGSSSLYSRSEIGLLVVGVLLCVYGD-- 391

Query: 428 TSFLRVVNFPPRGIGARTLETLQDAARAAGRSLHDAVSVVGGKAGANLTGFVAKIDVLRE 487
              LR++   P        E L    R AG      +    G+    L   + ++DV   
Sbjct: 392 ---LRLIENHP-----CKREMLYGFLREAG------IRWQKGQVKEALDALMTQVDVF-- 435

Query: 488 QTQGVSLREIIELVLDHSGLVEHYKADREGADRIENLDELVNAAESFVTQ-------EGF 540
                    ++  + ++S    H +   E    + N D+    A + +         EG 
Sbjct: 436 --------SVLGRLFENS---PHQRERLERLASVRNKDDDSVLASNVLQHLSLAGFIEGV 484

Query: 541 GRDAVALPV--DELRQSPASQGIDLTRPVIDEPLAPDAETGETLSPLAAFLTHAALESGD 598
           G D+V      D LR     + + ++ P+       DA T   L      + H    S D
Sbjct: 485 GSDSVRRTASNDRLRGVDRIEELLISNPI-------DARTFLNL------ILHPQDISAD 531

Query: 599 NQAQAGQDAVQLMTVHAAKGLEFDCVFITGMEEGLFP-------------HENSMSDFES 645
           +      + + L T+H +KGLE+D V + G+ +  FP                S+S+ E 
Sbjct: 532 S------EPITLATIHGSKGLEWDHVILIGLNDCEFPGGKPDSGTQLPALTSESISN-EE 584

Query: 646 LEEERRLMYVAITRARKRLYL 666
           LE ERRL YV ITRA+ +L+L
Sbjct: 585 LEVERRLFYVGITRAKHQLHL 605