Pairwise Alignments

Query, 773 a.a., 3'-to-5' exoribonuclease RNase R from Variovorax sp. SCN45

Subject, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

 Score =  574 bits (1480), Expect = e-168
 Identities = 332/762 (43%), Positives = 451/762 (59%), Gaps = 49/762 (6%)

Query: 20  LDEFEGTVQGHRDGHGFVQRDDG---EADIYLPPNEMRAVLHKDRVKARVVRQDRRGRPE 76
           L+  +G V GH+DGHG+V+ +     E DI LP ++MR ++H D V  +    D+RGR E
Sbjct: 86  LEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHHQMRTLIHGDFVLVQPSGTDKRGRKE 145

Query: 77  GRVVEIVERSEQPIIGRLLHEGGIWLVAPEDKRYGQDVLIPKGATGPAKVGQVVVVQLTE 136
           GR+V I+E     I+GR   E G   V P+D R   D+LIP      A++G VVV+++T+
Sbjct: 146 GRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIHHDILIPNDLRAGARMGNVVVIEITD 205

Query: 137 PPALFGQPVGRVKEVLGEIDDPGMEIEIAVRKYGVPHEFSAECLAEAKALPEKVRPADKK 196
                   +G+V EVLGE   PGME +IA+R + +PHE+ AE   +   L E+V    K+
Sbjct: 206 RGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQIPHEWPAEVEQQVAGLTEEVPEEAKQ 265

Query: 197 GRVDLTDIPLVTIDGEDARDFDDAVYCEPAKVGRGKGWRLLVAIADVSAYVQTGSGIDID 256
           GRVDL  +PLVTIDGEDARDFDDAVYCE  K   G GWRL VAIADVS YV+  + +D +
Sbjct: 266 GRVDLRALPLVTIDGEDARDFDDAVYCEAKK---GGGWRLWVAIADVSYYVRPDTALDKE 322

Query: 257 AYDRATSVYFPRRVIPMLPEKLSNGLCSLNPEVERLCMVCDMLVAADGEIYAYQFYPAVM 316
           A +R  SVYFP +V+PMLPE LSNGLCSLNP+V+RLCMVC+M V+  G++  Y+ Y AVM
Sbjct: 323 AINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSETGKLSGYKHYEAVM 382

Query: 317 FSHARFTYTEVAAILGNTRGPEAAKRKDR--VKDLLNLADVYKALLKQRGKRGAVDFETT 374
            SHAR TYT+V  IL    G E  + + +  V  L  L  +Y+ L   R +RGA++FET 
Sbjct: 383 NSHARLTYTKVHEIL---EGDEELRERYKALVPHLEELHKMYQVLKSARDERGAIEFETV 439

Query: 375 ETQIICDDAGRIEKIVPRTRNEAHRLIEEAMLAANVCSADFIAEGKHPGLFRVHEGPTPE 434
           ET+ I +   +IE I P  RN+AH+LIEE M+ AN+ SA  + + K   L+RVHE P  E
Sbjct: 440 ETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASLVEKAKEAALYRVHEPPGEE 499

Query: 435 KKEILRGYLKAMGVGLSITDDPKPGEFQAIAEATKERPDAQQIHTMLLRSMQQAIYTPIN 494
           +    R +L  +G+ LS   +P P ++  + +   ERPD + I TMLLRSM+QA+Y   N
Sbjct: 500 RLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKELIQTMLLRSMKQAVYNADN 559

Query: 495 SGHFGLAYEAYTHFTSPIRRYPDLLVHRVIKAILGKT--RYQLPMLPTPGEAHAKLAKRL 552
           +GHFGLA + Y HFTSPIRRYPDLL+HR IK ++ K   R Q    PT G  ++      
Sbjct: 560 AGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEGRNQDRWTPTGGYHYS------ 613

Query: 553 ASRVKAPTNKPQKATVAPSKEVLAWEAAGLHCSANERRADEASRDVEAWLKCKYMREHLG 612
                                    +  G  CS  ERRAD+A+R+V  WLKC+YM++H+G
Sbjct: 614 ---------------------FDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVG 652

Query: 613 EEYGGVVTAATTFGIFVTLDAMYVEGLVHITELGGEYFKFDEMRQELRGERTGIRYAIGT 672
           EE  GVV   T+FG FV L  ++++GLVHI+ L  +Y+ +D + Q L GE  G  Y +G 
Sbjct: 653 EELEGVVANVTSFGFFVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGESFGAIYRLGD 712

Query: 673 RVRVQVSRVDLDGRKIDFRLVREGEELMARAMKDKGAASSGVPVKASAKRGTRHKAAEAG 732
            V+V+V  V+LD R+IDF LV    +L  +    K  A      +A AK   + +AA  G
Sbjct: 713 AVKVKVLAVNLDDRQIDFELVETSRKLRGQGKTAKKRAD-----EARAKAQGKKEAATKG 767

Query: 733 GGEPRGERGTSASAGPQ-SAMQAFKSAVKKAANKMKGRKPRR 773
                G+  T +   PQ  A +   S  +    K K  K R+
Sbjct: 768 A---CGKSPTKSELKPQVEATRRPDSEGRSKPKKTKAPKKRK 806