Pairwise Alignments

Query, 388 a.a., ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 394 a.a., Extracellular ligand-binding receptor (NCBI) from Rhodospirillum rubrum S1H

 Score = 99.0 bits (245), Expect = 2e-25
 Identities = 112/412 (27%), Positives = 180/412 (43%), Gaps = 53/412 (12%)

Query: 1   MKVMNRIRTLAAVA--VGLGALSAASA---------WAADLKVGFITSLSGPVSSLGIPY 49
           MKV  RI    A+   +GLG +S ++A             L +G+   L+G  ++ G  +
Sbjct: 1   MKVFGRIGPFCALLAMLGLGLVSPSAAREDTGEGVSQEPALLLGYELPLTGANAAYGRVF 60

Query: 50  DKGMKAAVAYKSE---VGGRKVQVIQLDDASDPSTAARNARKLIEEDKVDVIIGTAGAPG 106
            +  +  +   +    VGGR V ++  D   D   A   AR  +++ +V  ++G   +  
Sbjct: 61  QEAARLQLDRFNAAGGVGGRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDFSSTV 120

Query: 107 SLAIAGVARETKTPLIS--IANADLAGEEGAWMVTL--------PQPAPLMMGAMVEKMK 156
           S+A   +  +   P +S   A+ D   +   W            P  A  M+G       
Sbjct: 121 SMAAGSIYGKEGMPQLSPTAAHPDYI-KISPWQFRAITTPAFEGPNNAAWMIGD------ 173

Query: 157 QAGVKTVAYIGYSDAWGDLVYDALMKSAPAAGIKVVSNERYARSDSSVAGQVLKIVALRP 216
             G  +VA IG +  WG     A  K+    G  VV NE     +      + +I    P
Sbjct: 174 --GFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDEAP 231

Query: 217 DAVITGASGTPGALPYL-ALAERGYKGKIYGMHSLINPDFIRVGGPSVEGLLAPTGPVVV 275
            A+   A     A P+L AL  RG    +YG  +L +P FI +GGP+VEG+   T  V+ 
Sbjct: 232 QAIYL-AMAYEDAAPFLRALRARGSALPVYGSSALYSPKFIDLGGPAVEGVRLATAFVLG 290

Query: 276 AEQLPDSNPMKKIAMDFRTAYQKANGAPPTDTFSAYSFDAWLIYLDAAQRALASKAEPGT 335
           A     S+P   + ++F +AY+   GA PT  F+A+ +DA  I L A  RA       G 
Sbjct: 291 A-----SDP---VVVEFVSAYETLYGAIPT-LFAAHGYDAVGIMLAAVGRA-------GP 334

Query: 336 PQFRLALRDAIVSTKELVGTHSVYNFKPTDRYGSDDRSRVVVKLEKGQWKLV 387
              R +LRDA+ +T    G   +  F P  R  +   +R+VV+  +G ++++
Sbjct: 335 EVTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVR--EGDFRVI 384