Pairwise Alignments

Query, 542 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Variovorax sp. SCN45

Subject, 557 a.a., AMP-binding protein from Methanococcus maripaludis S2

 Score =  132 bits (332), Expect = 3e-35
 Identities = 125/486 (25%), Positives = 203/486 (41%), Gaps = 36/486 (7%)

Query: 56  YAQAGYGHGHRVGLLLENRPAFIFHWLALNALGVSVVPINAEMRSAELVYLIGHSEIGLA 115
           + + G   G  V L L++R  F F  L L+ +G   +P    + + ++VY I  + + + 
Sbjct: 80  FLKHGIKKGDTVMLTLKSRYEFWFCMLGLHKIGAVAIPATHMLTTKDIVYRIEKAGLKMI 139

Query: 116 VTLQERAADLRAAAAQAGIEFETM-------GPDDAVPPARTPAPRAHE---PVG----- 160
           V + E         A + I  + +         D  +  ++     + +   PVG     
Sbjct: 140 VCIGENGVPDYVDEAVSEINSDVLKACVSNLNNDSWIDFSKELEESSEDFTRPVGEMDTK 199

Query: 161 TDTECGLLYTSGTTGRPKGCILSNAY---FLRAGEWYAALDGVCSIRPDKERVITPLPLN 217
            D      ++SGTTG PK     + Y    +   +++  ++       D     T     
Sbjct: 200 NDDVLVAYFSSGTTGYPKLIQHDHEYPLGHITTAKYWQNVE-------DDGLHYTVADSG 252

Query: 218 HMNAMAFSTMVVLVAGGCLV--QLDRFHPKTWLASAKESGATIVHYLGVMPAMLLSAPAS 275
               +        +AG  +     DRF     L    +   T       +   ++    S
Sbjct: 253 WAKCIRGKLYGQWIAGTAVFVYDYDRFDAGNMLEKIAKYKITTFCAPPTIYRFMIKQDIS 312

Query: 276 AADRDHAIRWGFGAG--VDRKNHAPFEERFGFPLVEAWAMTETGAAACIMANREPRLVGT 333
            AD   ++ +   AG  ++ + +  F E  G  L+E +  TET  +       +P+    
Sbjct: 313 KADFS-SLHYAVTAGEPLNPEVYNKFLEFTGLRLMEGFGQTETVVSVANFTWMDPK---P 368

Query: 334 SCFGRQEDFVEIRLVGEDGGDAAVDAPGELLVRSAGSDPRRYFFSGYLKDEEATREAWAD 393
              G+     ++ + G DG +  V   GEL  ++    P    FSGY KD E T++AW D
Sbjct: 369 GSMGKPVPIFDLMIKGPDGKECDVGEEGELAFKTEDGKPLG-LFSGYFKDPERTKKAWYD 427

Query: 394 GWFHTGDLVRRDAQGNFFFVDRKKNVIRRSGENISAVEVESVLNQHPAVKASAVAATPDA 453
           G++HTGD   +D  G  +FV R  ++I+ SG  I   EVES L  HPAV   A+   PD 
Sbjct: 428 GYYHTGDTAWKDEDGYLWFVGRNDDLIKSSGYRIGPFEVESALISHPAVLECAITGVPDP 487

Query: 454 VRGDEVLACVVMREDAGAVHPEQIAASIVQHALAQLAYYKAPGYVAFVDALPLTPSQKIQ 513
           VRG  V A +V+  +  A   E++   +  H     A YK P  + FV  LP T S KI+
Sbjct: 488 VRGQIVKATIVLTSEYEA--SEELKKELQDHVKHNTAPYKYPRAIEFVKELPKTISGKIR 545

Query: 514 RGQLRE 519
           R ++RE
Sbjct: 546 RVEIRE 551