Pairwise Alignments

Query, 542 a.a., Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) from Variovorax sp. SCN45

Subject, 549 a.a., AMP-binding protein from Methanococcus maripaludis S2

 Score =  134 bits (338), Expect = 7e-36
 Identities = 140/555 (25%), Positives = 221/555 (39%), Gaps = 61/555 (10%)

Query: 5   TVHQVFAATAARTPQAEFLFTESVTAAAYGIEAGAIRWGDAAGRIERLRAAYAQAGYGHG 64
           T+ + F   A + P  EFL         Y        + +   R + L     + G   G
Sbjct: 7   TIGEFFEKQAQKDPDREFL--------VYPDRNLRFTYKEFDERTDLLAKGLLEIGIKKG 58

Query: 65  HRVGLLLENRPAFIFHWLALNALGVSVVPINAEMRSAELVYLIGHSEI-GLAVTLQERAA 123
             +G+   N P ++    A   +GV +V +N   +S EL Y++  S++  LA+    R  
Sbjct: 59  DHIGIWARNVPDWLTFMFATAKIGVVLVTVNTAYKSHELAYVMKQSDMKALAIIDSFRDV 118

Query: 124 DLRAAAAQAGIEFETMGP----DDAVPPARTP---APRAHEPVGTDTECGLL-------- 168
           +      +   E +T        +  P  +         H  +   TE  LL        
Sbjct: 119 NYLEILYELVPELKTSQRGKLNSEEFPYLKNVIYVGQEKHRGMYNTTELMLLGNYVSDEK 178

Query: 169 -----------------YTSGTTGRPKGCILSNAYFLRAGEWYAALDGVCSIRPDKERVI 211
                            YTSGTTG PKG +L++   L  G +     G      ++ER+ 
Sbjct: 179 LIEAKKGLDSDDVINMQYTSGTTGFPKGVMLTHKNILNNGYYI----GEKQKFTEEERLC 234

Query: 212 TPLPLNHMNAMAFSTMVVLVAGGCLVQLDRFHPKTWLASAKESGATIVHYLGVMPAMLLS 271
            P+PL H   +    + +L  GG LV L+ F P   LA+ ++   T V+ +  M     S
Sbjct: 235 LPVPLFHCFGIVLGVLALLTHGGTLVMLEIFDPLLVLAAIQKEKCTAVYGVPTMFIAEFS 294

Query: 272 APASAADRDHAIRWGFGAGVDRKNHAP---FEERFGFPLVEAWAMTETGAAACIMANREP 328
            P        ++R G  AG      A      + +   +  ++ +TE      + +  +P
Sbjct: 295 HPMFEMFDLSSLRTGIMAGSTCPIEAMKKVMSDMYMREITISYGLTEASPVFTMTSVDDP 354

Query: 329 RLVGTSCFGRQEDFVEIRLVGEDGGDA-AVDAPGELLVRSAGSDPRRYFFSGYLKDEEAT 387
                   G+     E++++  + G+  A    GE+  R            GY K  E T
Sbjct: 355 FEKRVESVGKAMPHCEVKIIDPETGETLAPGNVGEICCRGYN------VMKGYYKMPEKT 408

Query: 388 REAWA-DGWFHTGDLVRRDAQGNFFFVDRKKNVIRRSGENISAVEVESVLNQHPAVKASA 446
            E    DGW H+GDL   D  G +  V R K++I R GENI   E+E  L   P +  + 
Sbjct: 409 AEVIEKDGWLHSGDLAVEDEDGYYKIVGRIKDMIIRGGENIYPREIEEFLYTMPGINDAQ 468

Query: 447 VAATPDAVRGDEVLACVVMREDAGAVHPEQIAASIVQHALAQLAYYKAPGYVAFVDALPL 506
           V   PD   G+ V A V+ +E       E     +   AL ++A YK P +V  V+  P+
Sbjct: 469 VVGIPDEKYGEIVGAFVIPKEGY-----EIKEEDVRDFALEKIARYKVPKHVFVVEEFPM 523

Query: 507 TPSQKIQRGQLREMA 521
           T S KIQ+ +L E+A
Sbjct: 524 TASGKIQKFKLTELA 538