Pairwise Alignments

Query, 627 a.a., ATP-dependent RNA helicase NGO0650 from Variovorax sp. SCN45

Subject, 503 a.a., ATP-dependent RNA helicase from Sinorhizobium meliloti 1021

 Score =  265 bits (676), Expect = 5e-75
 Identities = 189/561 (33%), Positives = 275/561 (49%), Gaps = 74/561 (13%)

Query: 57  FIKLGLAPELIAAVADMGFTQPTTVQEKVIPIAMGEQAGGAQSARFVDLMVSSQTGSGKT 116
           F +LGL+  ++A ++  GF +PT +Q + IP+ + +           DL+  +QTG+GKT
Sbjct: 4   FKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDH----------DLIGLAQTGTGKT 53

Query: 117 AAFLLPVLHTLIKRQAEAEAEAKAEFQRLAAEAAARGEAVPKKPKRKDPTNARHFKAATP 176
           AAF LP++  L+                      A G       +R DP N R       
Sbjct: 54  AAFGLPMIEKLV----------------------ADG-------RRPDPRNIR------- 77

Query: 177 GALILCPTRELAQQVAHDAIELVRHCRGLRIANVVGGMPYQLQIARL-QNADLVVATPGR 235
            AL+L PTREL  Q+A + ++L      L+I  VVGG+    Q  +L +  D++VATPGR
Sbjct: 78  -ALVLAPTRELVNQIAAN-LKLFVKKSPLKIGLVVGGVSINKQTEQLARGVDILVATPGR 135

Query: 236 LLDLQRSMQIKLDQVKFLVVDEADRMLDLGFADDLAEVNQLTIERQQTMMFSATFAPRIQ 295
           LLDL     + L Q ++LV+DEAD+MLDLGF  DL ++++L  + +QT++FSAT    I 
Sbjct: 136 LLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKNRQTLLFSATMPKLIA 195

Query: 296 QLATRVMREPQRVTIDSPQEKHANIKQVLFWADNAQHKRKLLDHWLRDTSINQAIVFAST 355
           +LA   + +P +V +  P +    ++Q + +      K  +L   L       +++F+ T
Sbjct: 196 ELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQTLTANPDGLSLIFSRT 255

Query: 356 QVECDGLANDLQQDGFSAVALHGALSQGLRNRRLMALRQGQVQILVATDVAARGIDVPTI 415
           +   + L   L   GF A ++HG  SQG R R L A R G++++LVATDVAARGID+P +
Sbjct: 256 KHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVLVATDVAARGIDIPGV 315

Query: 416 THVFNFGLPMKAEDYTHRIGRTGRAGRDGLAITFAEFRDRRKIMDIEHYSRQQFKAEVVP 475
           THV+N+ LP   + Y HRIGRT R GRDG+AI F    + R + DIE     Q    V  
Sbjct: 316 THVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDIEKLMGIQI--AVAS 373

Query: 476 GMEPQQRMPQSRPQGDFGGRGRDNHSRDRKFGGGGGGHRGGNGGGFGGGNSNYAGASGF- 534
           G  P     Q+RP    GGRG      + +  G G G R   GG         A A GF 
Sbjct: 374 GEAPAD---QARPSKGRGGRGNGQPRGNGQPRGNGAGQR--QGGPRRDRPQRQAAAGGFA 428

Query: 535 ------NDRGSRAPGPRTGGFG---GQNAGFGGGRDEGNGGGGYGRKPGWGDSAPRGGNG 585
                 ++R       R  G G   G+  G    + + + G    ++   G       NG
Sbjct: 429 GDELLRDERSHERRDQRAAGHGPADGRPEGHRNHKAQKHHGRPGPQQARRGSEQSGERNG 488

Query: 586 GGRGDFAPREGFAPRGNGAGH 606
           GG            R +G GH
Sbjct: 489 GGNR--------PQRADGRGH 501