Pairwise Alignments

Query, 334 a.a., Transcriptional regulator, AraC family from Variovorax sp. SCN45

Subject, 311 a.a., Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain from Pseudomonas fluorescens FW300-N2E2

 Score =  127 bits (319), Expect = 4e-34
 Identities = 94/299 (31%), Positives = 147/299 (49%), Gaps = 9/299 (3%)

Query: 16  VLLPGSLVLDWAGPAEALRIANQRLRAAGQPERFAIEFASPRPTSTGSVGIALTGLAPLP 75
           VL P  L+LD AGP E   IAN+ L A  + +   +   + R     S G+++     + 
Sbjct: 2   VLFPDFLLLDMAGPLEVFSIANRYLAADQRYQLLTL--GTERGPLRASNGVSVQADIHID 59

Query: 76  TSWDGPGWVVLLGLPGDSIAIDNPETQDLLHWLRGQRFERGRLELVTICAGAVLAAHAGA 135
            +W     +++ G PG      N +   L  WLR       R    +IC GA +   AG 
Sbjct: 60  QAWAAYHVLLVPGGPGAY----NDQHPGLHTWLRAAAQRATRYG--SICTGAFVLGEAGL 113

Query: 136 LAGRRATTHHHHLGELRTVEPRCDVVANRVFVIDPPLYSSAGVTTGIDLILHRIGELCGE 195
           L G R TTH H+   L    P+  V  +++F+ D  L +S GVT GIDL L  + +  G 
Sbjct: 114 LDGYRVTTHWHYTERLIQRFPKSLVETDKIFLQDRRLITSGGVTAGIDLALSIVAQDHGR 173

Query: 196 ALAAQVAQTMVVALRRGPQDPELSPFLAYRNHLHAALHRVQDAVSEQPQADWSVPRMAEV 255
            +A  VA+ ++V ++R     + SP +A  +   +A+ RVQ+ V E  +  +++ RMA +
Sbjct: 174 KVALDVAKVLLVVMKRQGGQAQFSPSVAAVSTQESAITRVQNHVMEHLEEPFTIERMAAL 233

Query: 256 AHTSARHLTRLFMEHAGVAPLAYLRRLRLAVA-QLALASGASVTRAAEQSGFGSDTQLR 313
           A  SARH  R+F     + P+ +L+  R+  A QL   +   +   A +SGFGS   +R
Sbjct: 234 AAMSARHFARVFAREVKMTPMEFLQGARIDRARQLLETTDLPLKTVAFRSGFGSVRHMR 292