Pairwise Alignments

Query, 430 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 192 a.a., RNA polymerase sigma factor RpoE (RefSeq) from Shewanella sp. ANA-3

 Score = 47.8 bits (112), Expect = 3e-10
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 8/164 (4%)

Query: 24  AKIIATVARMVRDVGLAEELAQDALVSALEQWPDAGVPDNPAAWLTAVAKRRALDRLRHL 83
           +K+++ ++R VR+     ++AQ+A + A    P+         WL  +A   A + L   
Sbjct: 31  SKVVSLISRYVRNQADVTDVAQEAFIKAYRALPNFRGESAFYTWLYRIAVNTAKNYLVS- 89

Query: 84  QLAEHKAGEIGRELDARHEMAQA--DFADAVDAALDDDIGDDLLRLVFTACHPVLSTEAR 141
           Q     A ++  E    +E + A  +FA      L D+I     ++VF      L  E R
Sbjct: 90  QGRRAPANDVDAEDAEYYEGSDALKEFASPERLMLSDEI----KKVVFETLE-TLPEELR 144

Query: 142 VALTLRVMGGLTTDEIARAFLVPEATVAQRIVRAKRTLAEARVP 185
           +A++LR + G++ ++IA     P  TV  RI RA+  + +   P
Sbjct: 145 MAISLRELDGMSYEDIAIIMDCPVGTVRSRIFRAREAIDKKLQP 188